Clinical History Segment Extraction from Chronic Fatigue Syndrome Assessments to Model Disease Trajectories.

Journal: Studies in health technology and informatics
Published Date:

Abstract

Chronic fatigue syndrome (CFS) is a long-term illness with a wide range of symptoms and condition trajectories. To improve the understanding of these, automated analysis of large amounts of patient data holds promise. Routinely documented assessments are useful for large-scale analysis, however relevant information is mainly in free text. As a first step to extract symptom and condition trajectories, natural language processing (NLP) methods are useful to identify important textual content and relevant information. In this paper, we propose an agnostic NLP method of extracting segments of patients' clinical histories in CFS assessments. Moreover, we present initial results on the advantage of using these segments to quantify and analyse the presence of certain clinically relevant concepts.

Authors

  • Sonia Priou
    IoPPN, King's College London; NIHR Maudsley Biomedical Research Centre.
  • Natalia Viani
    Department of Electrical, Computer and Biomedical Engineering, University of Pavia, Via Ferrata 5, 27100, Pavia, PV, Italy. Electronic address: natalia.viani01@universitadipavia.it.
  • Veshalee Vernugopan
    University of Glasgow, School of Medicine.
  • Chloe Tytherleigh
    IoPPN, King's College London; NIHR Maudsley Biomedical Research Centre.
  • Faduma Abdalla Hassan
    Leicester Medical School.
  • Rina Dutta
    Department of Psychological Medicine, NIHR Biomedical Research Centre, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK.
  • Trudie Chalder
    IoPPN, King's College London; NIHR Maudsley Biomedical Research Centre.
  • Sumithra Velupillai
    Department of Computer and Systems Sciences (DSV), Stockholm University, Stockholm, Sweden; Department of Biomedical Informatics, University of Utah, Salt Lake City, UT.