Machine and deep learning methods for radiomics.

Journal: Medical physics
Published Date:

Abstract

Radiomics is an emerging area in quantitative image analysis that aims to relate large-scale extracted imaging information to clinical and biological endpoints. The development of quantitative imaging methods along with machine learning has enabled the opportunity to move data science research towards translation for more personalized cancer treatments. Accumulating evidence has indeed demonstrated that noninvasive advanced imaging analytics, that is, radiomics, can reveal key components of tumor phenotype for multiple three-dimensional lesions at multiple time points over and beyond the course of treatment. These developments in the use of CT, PET, US, and MR imaging could augment patient stratification and prognostication buttressing emerging targeted therapeutic approaches. In recent years, deep learning architectures have demonstrated their tremendous potential for image segmentation, reconstruction, recognition, and classification. Many powerful open-source and commercial platforms are currently available to embark in new research areas of radiomics. Quantitative imaging research, however, is complex and key statistical principles should be followed to realize its full potential. The field of radiomics, in particular, requires a renewed focus on optimal study design/reporting practices and standardization of image acquisition, feature calculation, and rigorous statistical analysis for the field to move forward. In this article, the role of machine and deep learning as a major computational vehicle for advanced model building of radiomics-based signatures or classifiers, and diverse clinical applications, working principles, research opportunities, and available computational platforms for radiomics will be reviewed with examples drawn primarily from oncology. We also address issues related to common applications in medical physics, such as standardization, feature extraction, model building, and validation.

Authors

  • Michele Avanzo
    Division of Medical Physics, Centro di Riferimento Oncologico di Aviano (CRO) IRCCS, 33081, Aviano, PN, Italy.
  • Lise Wei
    Department of Radiation Oncology, University of Michigan, Ann Arbor, MI, USA.
  • Joseph Stancanello
    Division of Medical Physics, Centro di Riferimento Oncologico di Aviano (CRO) IRCCS, 33081, Aviano, PN, Italy.
  • Martin Vallières
    Medical Physics Unit, McGill University and Cedars Cancer Center, 1001 Décarie Blvd, Montréal, QC, H4A 3J1, Canada.
  • Arvind Rao
    Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas.
  • Olivier Morin
    Department of Radiation Oncology, University of California, San Francisco, California.
  • Sarah A Mattonen
    Department of Radiology, Stanford University, Stanford, CA, 94305, USA.
  • Issam El Naqa
    Department of Machine Learning, Moffitt Cancer Center, Tampa, Florida.