PAIP 2019: Liver cancer segmentation challenge.

Journal: Medical image analysis
Published Date:

Abstract

Pathology Artificial Intelligence Platform (PAIP) is a free research platform in support of pathological artificial intelligence (AI). The main goal of the platform is to construct a high-quality pathology learning data set that will allow greater accessibility. The PAIP Liver Cancer Segmentation Challenge, organized in conjunction with the Medical Image Computing and Computer Assisted Intervention Society (MICCAI 2019), is the first image analysis challenge to apply PAIP datasets. The goal of the challenge was to evaluate new and existing algorithms for automated detection of liver cancer in whole-slide images (WSIs). Additionally, the PAIP of this year attempted to address potential future problems of AI applicability in clinical settings. In the challenge, participants were asked to use analytical data and statistical metrics to evaluate the performance of automated algorithms in two different tasks. The participants were given the two different tasks: Task 1 involved investigating Liver Cancer Segmentation and Task 2 involved investigating Viable Tumor Burden Estimation. There was a strong correlation between high performance of teams on both tasks, in which teams that performed well on Task 1 also performed well on Task 2. After evaluation, we summarized the top 11 team's algorithms. We then gave pathological implications on the easily predicted images for cancer segmentation and the challenging images for viable tumor burden estimation. Out of the 231 participants of the PAIP challenge datasets, a total of 64 were submitted from 28 team participants. The submitted algorithms predicted the automatic segmentation on the liver cancer with WSIs to an accuracy of a score estimation of 0.78. The PAIP challenge was created in an effort to combat the lack of research that has been done to address Liver cancer using digital pathology. It remains unclear of how the applicability of AI algorithms created during the challenge can affect clinical diagnoses. However, the results of this dataset and evaluation metric provided has the potential to aid the development and benchmarking of cancer diagnosis and segmentation.

Authors

  • Yoo Jung Kim
    Department of Biomedical Engineering, Seoul National University Hospital, Seoul, South Korea. Electronic address: yjkim191@gmail.com.
  • Hyungjoon Jang
    School of Electrical and Computer Engineering, Ulsan National Institute of Science and Technology, Ulsan, South Korea. Electronic address: jhj0110@unist.ac.kr.
  • Kyoungbun Lee
    Department of Pathology, Seoul National University Hospital, Seoul, South Korea. Electronic address: azi1003@snu.ac.kr.
  • Seongkeun Park
    Department of Biomedical Engineering, Seoul National University Hospital, Seoul, South Korea.
  • Sung-Gyu Min
    Department of Pathology, Seoul National University Hospital, Seoul, South Korea.
  • Choyeon Hong
    Department of Pathology, Seoul National University Hospital, Seoul, South Korea.
  • Jeong Hwan Park
    Department of Pathology, Seoul National University College of Medicine and SMG-SNU Boramae Medical Center, Seoul, Korea.
  • Kanggeun Lee
    School of Electrical and Computer Engineering, UNIST, Ulsan, Republic of Korea.
  • Jisoo Kim
    School of Electrical and Computer Engineering, Ulsan National Institute of Science and Technology, Ulsan, South Korea.
  • Wonjae Hong
    School of Electrical and Computer Engineering, Ulsan National Institute of Science and Technology, Ulsan, South Korea.
  • Hyun Jung
    Frederick National Laboratory for Cancer Research, Frederick, Maryland, United States.
  • Yanling Liu
    Frederick National Laboratory for Cancer Research, Frederick, Maryland, United States.
  • Haran Rajkumar
    Department of Engineering Design, Indian Institute Of Technology Madras, Chennai, Tamil Nadu, India.
  • Mahendra Khened
  • Ganapathy Krishnamurthi
  • Sen Yang
    Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China.
  • Xiyue Wang
    College of Electrical Engineering and Information Technology, Sichuan University, 610065, China. Electronic address: xiyue.wang.scu@gmail.com.
  • Chang Hee Han
    Department of Computer Science and Engineering, Sejong University, Seoul, South Korea.
  • Jin Tae Kwak
    Center for Interventional Oncology, National Institutes of Health, Bethesda, MD, 20892, USA.
  • Jianqiang Ma
    Alibaba Group, China.
  • Zhe Tang
    Division of Cardiology, Department of Medicine and Therapeutics, Prince of Wales Hospital, The Chinese University of Hong Kong, Hong Kong, China.
  • Bahram Marami
    The Center for Computational and Systems Pathology, Department of Pathology, Icahn School of Medicine at Mount Sinai and The Mount Sinai Hospital, New York, USA.
  • Jack Zeineh
    Department of Pathology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
  • Zixu Zhao
    Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong.
  • Pheng-Ann Heng
  • Rudiger Schmitz
  • Frederic Madesta
  • Thomas Rösch
    Department for Interdisciplinary Endoscopy, University Hospital Hamburg-Eppendorf.
  • Rene Werner
  • Jie Tian
    CAS Key Laboratory of Molecular Imaging, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China.
  • Elodie Puybareau
    Université Paris-Est, LIGM (UMR 8049), CNRS, ENPC, ESIEE, UPEM, 2 Boulevard Blaise Pascal, 93162, Noisy-le Grand, France; EPITA Research and Development Laboratory (LRDE), 14-16 rue Voltaire, 94270, Le Kremlin-Bicêtre, France. Electronic address: elodie.puybareau@lrde.epita.fr.
  • Matteo Bovio
    LRDE EPITA, France.
  • Xiufeng Zhang
    Tianjin Chengjian University, Tianjin Shi, China.
  • Yifeng Zhu
    University of Maine, Orono, ME, United States.
  • Se Young Chun
    School of Electrical and Computer Engineering, Ulsan National Institute of Science and Technology, Ulsan, South Korea. Electronic address: sychun@unist.ac.kr.
  • Won-Ki Jeong
  • Peom Park
    Department of Industrial Engineering, Ajou University, Suwon, Republic of Korea.
  • Jinwook Choi
    Dept. of Biomedical Engineering, College of Medicine, Seoul National University 103, Daehak-ro, Jongno-gu, Seoul, 03080, Republic of Korea. Electronic address: jinchoi@snu.ac.kr.