RBPsuite: RNA-protein binding sites prediction suite based on deep learning.

Journal: BMC genomics
Published Date: Dec 9, 2020

Abstract

BACKGROUND: RNA-binding proteins (RBPs) play crucial roles in various biological processes. Deep learning-based methods have been demonstrated powerful on predicting RBP sites on RNAs. However, the training of deep learning models is very time-intensive and computationally intensive.

Authors

  • Xiaoyong Pan
    Department of Veterinary Clinical and Animal Sciences, University of Copenhagen, Copenhagen, Denmark. xypan172436@gmail.com.
  • Yi Fang
    Department of Neurosurgery, The Fuzhou General Hospital, Fuzhou, China.
  • Xianfeng Li
    Key laboratory of Carcinogenesis and Translational Research, Peking University Cancer Hospital, Beijing, 100142, China.
  • Yang Yang
    Department of Gastrointestinal Surgery, The Third Hospital of Hebei Medical University, Shijiazhuang, China.
  • Hong-Bin Shen
    Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China. hbshen@sjtu.edu.cn.

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