Deep Multi-Magnification Networks for multi-class breast cancer image segmentation.

Journal: Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society
Published Date:

Abstract

Pathologic analysis of surgical excision specimens for breast carcinoma is important to evaluate the completeness of surgical excision and has implications for future treatment. This analysis is performed manually by pathologists reviewing histologic slides prepared from formalin-fixed tissue. In this paper, we present Deep Multi-Magnification Network trained by partial annotation for automated multi-class tissue segmentation by a set of patches from multiple magnifications in digitized whole slide images. Our proposed architecture with multi-encoder, multi-decoder, and multi-concatenation outperforms other single and multi-magnification-based architectures by achieving the highest mean intersection-over-union, and can be used to facilitate pathologists' assessments of breast cancer.

Authors

  • David Joon Ho
    Video and Image Processing Laboratory, School of Electrical and Computer Engineering, Purdue University, West Lafayette, IN, 47907, USA.
  • Dig V K Yarlagadda
    Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY 10065 USA.
  • Timothy M D'Alfonso
    Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY 10065 USA.
  • Matthew G Hanna
    Department of Pathology, University of Pittsburgh Medical Center, Pittsburgh, Pennsylvania; Computational Pathology and AI Center of Excellence (CPACE), University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania.
  • Anne Grabenstetter
    Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY 10065 USA.
  • Peter Ntiamoah
    Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
  • Edi Brogi
    Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
  • Lee K Tan
    Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY 10065 USA.
  • Thomas J Fuchs
    Weill Cornell Medicine, New York, USA; Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, USA; Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, USA. Electronic address: gac2010@med.cornell.edu.