Accurate and fast mitotic detection using an anchor-free method based on full-scale connection with recurrent deep layer aggregation in 4D microscopy images.

Journal: BMC bioinformatics
Published Date:

Abstract

BACKGROUND: To effectively detect and investigate various cell-related diseases, it is essential to understand cell behaviour. The ability to detection mitotic cells is a fundamental step in diagnosing cell-related diseases. Convolutional neural networks (CNNs) have been successfully applied to object detection tasks, however, when applied to mitotic cell detection, most existing methods generate high false-positive rates due to the complex characteristics that differentiate normal cells from mitotic cells. Cell size and orientation variations in each stage make detecting mitotic cells difficult in 2D approaches. Therefore, effective extraction of the spatial and temporal features from mitotic data is an important and challenging task. The computational time required for detection is another major concern for mitotic detection in 4D microscopic images.

Authors

  • Titinunt Kitrungrotsakul
    Graduate School of Information Science and Engineering, Ritsumeikan University, Shiga, Japan.
  • Yutaro Iwamoto
  • Satoko Takemoto
    Center for Advanced Photonics, RIKEN, Wako, Saitama, Japan.
  • Hideo Yokota
    Cloud-Based Eye Disease Diagnosis Joint Research Team, RIKEN, Wako, Japan.
  • Sari Ipponjima
    Research Institute for Electronic Science, Hokkaido University, Sapporo, Hokkaido, Japan.
  • Tomomi Nemoto
    Research Institute for Electronic Science, Hokkaido University, Sapporo, Hokkaido, Japan.
  • Lanfen Lin
    State Key Lab of CAD & CG, Zhejiang University, Hangzhou, 310027, China.
  • Ruofeng Tong
    State Key Lab of CAD & CG, Zhejiang University, Hangzhou, 310027, China.
  • Jingsong Li
    Research Center for Healthcare Data Science, Zhejiang Lab, Hangzhou, China.
  • Yen-Wei Chen