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Microscopy

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A CNN-GNN Approach for Polarity Vectors Prediction in 3D Microscopy Images.

Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference
The polarity between nuclei and Golgi is an important aspect of cellular division, migration and signaling. For example, nucleus-Golgi polarity significantly impacts angiogenesis, the physiological process in which new blood vessels develop from pre-...

Deep Learning Method for Estimating Germ-layer Regions of Early Differentiated Human Induced Pluripotent Stem Cells on Micropattern Using Bright-field Microscopy Image.

Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference
Live cell staining is expensive and may bring potential safety issues in downstream clinical applications, bright-field images rather than staining images should be more suitable to reveal time-series changes of differentiating hiPSCs (human induced ...

Embryonic Quality Assessment using Advanced Deep Learning Architectures utilizing Microscopic Images of Blastocysts.

Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference
The accurate evaluation of embryonic quality which is a key aspect in Assisted Reproductive Technology (ART) and it is crucial to ensure the success of in vitro fertilization (IVF), especially at critical developmental phases like day 3 and day 5. To...

Pruning Sparse Tensor Neural Networks Enables Deep Learning for 3D Ultrasound Localization Microscopy.

IEEE transactions on image processing : a publication of the IEEE Signal Processing Society
Ultrasound Localization Microscopy (ULM) is a non-invasive technique that allows for the imaging of micro-vessels in vivo, at depth and with a resolution on the order of ten microns. ULM is based on the sub-resolution localization of individual micro...

ResGloTBNet: An interpretable deep residual network with global long-range dependency for tuberculosis screening of sputum smear microscopy images.

Medical engineering & physics
Tuberculosis is a high-mortality infectious disease. Manual sputum smear microscopy is a common and effective method for screening tuberculosis. However, it is time-consuming, labor-intensive, and has low sensitivity. In this study, we propose ResGlo...

SegElegans: Instance segmentation using dual convolutional recurrent neural network decoder in Caenorhabditis elegans microscopic images.

Computers in biology and medicine
Caenorhabditis elegans is a great model for exploring organismal, cellular, and subcellular biology through optical and fluorescence microscopy, with its research applications steadily expanding. However, manual processing of numerous microscopic ima...

Deep learning method for malaria parasite evaluation from microscopic blood smear.

Artificial intelligence in medicine
OBJECTIVE: Malaria remains a leading cause of global morbidity and mortality, responsible for approximately 5,97,000 deaths according to World Malaria Report 2024. The study aims to systematically review current methodologies for automated analysis o...

Digital Cytology Combined With Artificial Intelligence Compared to Conventional Microscopy for Anal Cytology: A Preliminary Study.

Cytopathology : official journal of the British Society for Clinical Cytology
INTRODUCTION: Recent studies have shown that digital cytology (DC) coupled with artificial intelligence (AI) algorithms is a valid approach to the diagnosis of cervico-vaginal lesions using liquid-based cytology (LBC). We evaluated the use of these m...

Scale selection and machine learning based cell segmentation and tracking in time lapse microscopy.

Scientific reports
Monitoring and tracking of cell motion is a key component for understanding disease mechanisms and evaluating the effects of treatments. Time-lapse optical microscopy has been commonly employed for studying cell cycle phases. However, usual manual ce...

Near-zero photon bioimaging by fusing deep learning and ultralow-light microscopy.

Proceedings of the National Academy of Sciences of the United States of America
Enhancing the reliability and reproducibility of optical microscopy by reducing specimen irradiance continues to be an important biotechnology target. As irradiance levels are reduced, however, the particle nature of light is heightened, giving rise ...