Joint segmentation and classification of breast masses based on ultrasound radio-frequency data and convolutional neural networks.

Journal: Ultrasonics
PMID:

Abstract

In this paper, we propose a novel deep learning method for joint classification and segmentation of breast masses based on radio-frequency (RF) ultrasound (US) data. In comparison to commonly used classification and segmentation techniques, utilizing B-mode US images, we train the network with RF data (data before envelope detection and dynamic compression), which are considered to include more information on tissue's physical properties than standard B-mode US images. Our multi-task network, based on the Y-Net architecture, can effectively process large matrices of RF data by mixing 1D and 2D convolutional filters. We use data collected from 273 breast masses to compare the performance of networks trained with RF data and US images. The multi-task model developed based on the RF data achieved good classification performance, with area under the receiver operating characteristic curve (AUC) of 0.90. The network based on the US images achieved AUC of 0.87. In the case of the segmentation, we obtained mean Dice scores of 0.64 and 0.60 for the approaches utilizing US images and RF data, respectively. Moreover, the interpretability of the networks was studied using class activation mapping technique and by filter weights visualizations.

Authors

  • Michał Byra
    Department of Ultrasound, Institute of Fundamental Technological Research, Polish Academy of Sciences, Pawińskiego 5B, 02-106, Warsaw, Poland. mbyra@ippt.pan.pl.
  • Piotr Jarosik
    Institute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, Poland.
  • Katarzyna Dobruch-Sobczak
    Institute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, Poland; Maria Sklodowska-Curie Memorial Cancer Centre and Institute of Oncology, Warsaw, Poland.
  • Ziemowit Klimonda
    Institute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, Poland.
  • Hanna Piotrzkowska-Wroblewska
    Institute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, Poland.
  • Jerzy Litniewski
    Institute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, Poland.
  • Andrzej Nowicki
    Department of Ultrasound, Institute of Fundamental Technological Research, Polish Academy of Sciences, Pawińskiego 5B, 02-106, Warsaw, Poland.