The Axes of Life: A Roadmap for Understanding Dynamic Multiscale Systems.

Journal: Integrative and comparative biology
Published Date:

Abstract

The biological challenges facing humanity are complex, multi-factorial, and are intimately tied to the future of our health, welfare, and stewardship of the Earth. Tackling problems in diverse areas, such as agriculture, ecology, and health care require linking vast datasets that encompass numerous components and spatio-temporal scales. Here, we provide a new framework and a road map for using experiments and computation to understand dynamic biological systems that span multiple scales. We discuss theories that can help understand complex biological systems and highlight the limitations of existing methodologies and recommend data generation practices. The advent of new technologies such as big data analytics and artificial intelligence can help bridge different scales and data types. We recommend ways to make such models transparent, compatible with existing theories of biological function, and to make biological data sets readable by advanced machine learning algorithms. Overall, the barriers for tackling pressing biological challenges are not only technological, but also sociological. Hence, we also provide recommendations for promoting interdisciplinary interactions between scientists.

Authors

  • Sriram Chandrasekaran
    Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA.
  • Nicole Danos
    Department of Biology, University of San Diego, San Diego, CA, USA.
  • Uduak Z George
    Department of Mathematics & Statistics, San Diego State University, San Diego, CA, USA.
  • Jin-Ping Han
    IBM TJ Watson Research Center, Ossining, NY, USA.
  • Gerald Quon
    Department of Molecular and Cellular Biology, University of California-Davis, Davis, CA,USA.
  • Rolf Müller
    Department of Microbial Natural Products, Helmholtz-Institute for Pharmaceutical Research Saarland, Helmholtz Centre for Infection Research and Pharmaceutical Biotechnology, Saarland University , 66123 Saarbrücken, Germany.
  • Yinphan Tsang
    Department of Natural Resources and Environmental Management, University of Hawai'i at Mānoa, Honolulu, HI, USA.
  • Charles Wolgemuth
    Departments of Physics and Molecular and Cellular Biology, University of Arizona, Tucson, AZ, USA.