Detection and Recognition of Pollen Grains in Multilabel Microscopic Images.

Journal: Sensors (Basel, Switzerland)
Published Date:

Abstract

Analysis of pollen material obtained from the Hirst-type apparatus, which is a tedious and labor-intensive process, is usually performed by hand under a microscope by specialists in palynology. This research evaluated the automatic analysis of pollen material performed based on digital microscopic photos. A deep neural network called YOLO was used to analyze microscopic images containing the reference grains of three taxa typical of Central and Eastern Europe. YOLO networks perform recognition and detection; hence, there is no need to segment the image before classification. The obtained results were compared to other deep learning object detection methods, i.e., Faster R-CNN and RetinaNet. YOLO outperformed the other methods, as it gave the mean average precision (mAP@.5:.95) between 86.8% and 92.4% for the test sets included in the study. Among the difficulties related to the correct classification of the research material, the following should be noted: significant similarities of the grains of the analyzed taxa, the possibility of their simultaneous occurrence in one image, and mutual overlapping of objects.

Authors

  • Elżbieta Kubera
    Department of Applied Mathematics and Computer Science, University of Life Sciences in Lublin, ul. Głęboka 28, 20-950 Lublin, Poland.
  • Agnieszka Kubik-Komar
    Department of Applied Mathematics and Computer Science, University of Life Sciences in Lublin, ul. Głęboka 28, 20-950 Lublin, Poland.
  • Paweł Kurasiński
    Department of Applied Mathematics and Computer Science, University of Life Sciences in Lublin, Głęboka 28, 20-950 Lublin, Poland.
  • Krystyna Piotrowska-Weryszko
    Department of Botany and Plant Physiology, University of Life Sciences in Lublin, Akademicka 15, 20-950 Lublin, Poland.
  • Magdalena Skrzypiec
    Institute of Mathematics, Maria Curie-Sklodowska University, pl. Marii Curie-Skłodowskiej 1, 20-031 Lublin, Poland.