Generative adversarial networks for biomedical time series forecasting and imputation.

Journal: Journal of biomedical informatics
Published Date:

Abstract

In the present systematic review we identified and summarised current research activities in the field of time series forecasting and imputation with the help of generative adversarial networks (GANs). We differentiate between imputation which describes the filling of missing values at intermediate steps and forecasting defining the prediction of future values. Especially the utilisation of such methods in the biomedical domain was to be investigated. To this end, 1057 publications were identified with the help of PubMed, Web of Science and Scopus. All studies that describe the use of GANs for the imputation/forecasting of time series were included irrespective of the application domain. Finally, 33 records were identified as eligible and grouped according to the topologies, losses, inputs and outputs of the presented GANs. In combination with a summary of all described application domains, this grouping served as a basis for analysing the peculiarities of the method in the biomedical context. Due to the broad spectrum of biomedical research, nearly all recognised methodologies are also applied in this domain. We could not identify any approach that proved itself superior in the biomedical area. Although GANs were initially designed to work in the image domain, many publications show that they are capable of imputing/forecasting non-visual time series.

Authors

  • Sven Festag
    Department of Medical Informatics, Medical Faculty, RWTH Aachen University.
  • Joachim Denzler
    Computer Vision Group, Friedrich-Schiller-Universität Jena, Jena, Germany.
  • Cord Spreckelsen
    Department of Medical Informatics, Medical Faculty, RWTH Aachen University.