Graph Transformer Networks: Learning meta-path graphs to improve GNNs.

Journal: Neural networks : the official journal of the International Neural Network Society
Published Date:

Abstract

Graph Neural Networks (GNNs) have been widely applied to various fields due to their powerful representations of graph-structured data. Despite the success of GNNs, most existing GNNs are designed to learn node representations on the fixed and homogeneous graphs. The limitations especially become problematic when learning representations on a misspecified graph or a heterogeneous graph that consists of various types of nodes and edges. To address these limitations, we propose Graph Transformer Networks (GTNs) that are capable of generating new graph structures, which preclude noisy connections and include useful connections (e.g., meta-paths) for tasks, while learning effective node representations on the new graphs in an end-to-end fashion. We further propose enhanced version of GTNs, Fast Graph Transformer Networks (FastGTNs), that improve scalability of graph transformations. Compared to GTNs, FastGTNs are up to 230× and 150× faster in inference and training, and use up to 100× and 148× less memory while allowing the identical graph transformations as GTNs. In addition, we extend graph transformations to the semantic proximity of nodes allowing non-local operations beyond meta-paths. Extensive experiments on both homogeneous graphs and heterogeneous graphs show that GTNs and FastGTNs with non-local operations achieve the state-of-the-art performance for node classification tasks. The code is available: https://github.com/seongjunyun/Graph_Transformer_Networks.

Authors

  • Seongjun Yun
    Department of Computer Science and Engineering, Korea University, Seoul, South Korea. Electronic address: ysj5419@korea.ac.kr.
  • Minbyul Jeong
    Department of Computer Science and Engineering, Korea University, Seoul, South Korea.
  • Sungdong Yoo
    Department of Computer Science and Engineering, Korea University, Seoul, South Korea. Electronic address: ysd424@korea.ac.kr.
  • Seunghun Lee
    Department of Radiology, Hanyang University Hospital for Rheumatic Diseases, Seoul, Korea.
  • Sean S Yi
    Department of Computer Science and Engineering, Korea University, Seoul, South Korea. Electronic address: seanswyi@korea.ac.kr.
  • Raehyun Kim
    Department of Computer Science and Engineering, Korea University, Seoul, South Korea. Electronic address: raehyun@korea.ac.kr.
  • Jaewoo Kang
    Department of Computer Science and Engineering, Korea University, Seoul, Republic of Korea.
  • Hyunwoo J Kim
    Dept. of Computer Science and Engineering, Korea University.