A multi-layer soft lattice based model for Chinese clinical named entity recognition.

Journal: BMC medical informatics and decision making
Published Date:

Abstract

OBJECTIVE: Named entity recognition (NER) is a key and fundamental part of many medical and clinical tasks, including the establishment of a medical knowledge graph, decision-making support, and question answering systems. When extracting entities from electronic health records (EHRs), NER models mostly apply long short-term memory (LSTM) and have surprising performance in clinical NER. However, increasing the depth of the network is often required by these LSTM-based models to capture long-distance dependencies. Therefore, these LSTM-based models that have achieved high accuracy generally require long training times and extensive training data, which has obstructed the adoption of LSTM-based models in clinical scenarios with limited training time.

Authors

  • Shuli Guo
    State Key Laboratory of Intelligent Control and Decision of Complex Systems, School of Automation, Beijing Institute of Technology, Beijing, 100081, China. Electronic address: guoshuli@bit.edu.cn.
  • Wentao Yang
    b Department of Hepatobiliary and Pancreatic Surgery , the Second Affiliated Hospital of Nanchang University , Nanchang , PR China.
  • Lina Han
    Department of Cardiovascular Internal Medicine of Second Medical Center, Chinese PLA General Hospital, Beijing, 100853, China. Electronic address: 2438381279@qq.com.
  • Xiaowei Song
    School of Artificial Intelligence, Hebei University of Technology, Tianjin 300130, P.R.China.
  • Guowei Wang
    School of Clinical Medicine, Ningxia Medical University, Yinchuan, China.