Deep learning-based segmentation in prostate radiation therapy using Monte Carlo simulated cone-beam computed tomography.

Journal: Medical physics
Published Date:

Abstract

PURPOSE: Segmenting organs in cone-beam CT (CBCT) images would allow to adapt the radiotherapy based on the organ deformations that may occur between treatment fractions. However, this is a difficult task because of the relative lack of contrast in CBCT images, leading to high inter-observer variability. Deformable image registration (DIR) and deep-learning based automatic segmentation approaches have shown interesting results for this task in the past years. However, they are either sensitive to large organ deformations, or require to train a convolutional neural network (CNN) from a database of delineated CBCT images, which is difficult to do without improvement of image quality. In this work, we propose an alternative approach: to train a CNN (using a deep learning-based segmentation tool called nnU-Net) from a database of artificial CBCT images simulated from planning CT, for which it is easier to obtain the organ contours.

Authors

  • Nelly Abbani
    Univ Lyon, INSA-Lyon, Université Claude Bernard Lyon 1, CNRS, Inserm, Lyon, France.
  • Thomas Baudier
    Univ Lyon, INSA-Lyon, Université Claude Bernard Lyon 1, CNRS, Inserm, Lyon, France.
  • Simon Rit
    Univ Lyon, INSA-Lyon, Université Claude Bernard Lyon 1, UJM-Saint Étienne, CNRS, Inserm, CREATIS UMR 5220, U1294, F-69373, Lyon, France.
  • Francesca di Franco
    Univ Lyon, INSA-Lyon, Université Claude Bernard Lyon 1, CNRS, Inserm, Lyon, France.
  • Franklin Okoli
    LaTIM, Université de Bretagne Occidentale, Inserm, Brest, France.
  • Vincent Jaouen
    LaTIM, INSERM UMR 1101, IBRBS, Faculty of Medicine, Univ Brest, 22 avenue Camille Desmoulins, 29238, Brest, France.
  • Florian Tilquin
    Univ Rennes, CLCC Eugène Marquis, Inserm, Rennes, France.
  • Anaïs Barateau
    Univ Rennes, CLCC Eugène Marquis, INSERM, LTSI - UMR 1099, F-35000 Rennes, France.
  • Antoine Simon
  • Renaud de Crevoisier
    Univ Rennes, CLCC Eugène Marquis, INSERM, LTSI - UMR 1099, F-35000 Rennes, France.
  • Julien Bert
    LaTIM, INSERM UMR 1101, IBRBS, Faculty of Medicine, Univ Brest, 22 avenue Camille Desmoulins, F-29238, Brest, France.
  • David Sarrut
    Université de Lyon, CREATIS, CNRS UMR5220, Inserm U1294, INSA-Lyon, Université Lyon 1, Lyon, France.