Biomedical named entity recognition with the combined feature attention and fully-shared multi-task learning.

Journal: BMC bioinformatics
Published Date:

Abstract

BACKGROUND: Biomedical named entity recognition (BioNER) is a basic and important task for biomedical text mining with the purpose of automatically recognizing and classifying biomedical entities. The performance of BioNER systems directly impacts downstream applications. Recently, deep neural networks, especially pre-trained language models, have made great progress for BioNER. However, because of the lack of high-quality and large-scale annotated data and relevant external knowledge, the capability of the BioNER system remains limited.

Authors

  • Zhiyu Zhang
    Department of Urology, The First Affiliated Hospital of Soochow University, Suzhou, Jiangsu, China.
  • Arbee L P Chen
    Department of Computer Science, National Tsing Hua University, Hsinchu, Taiwan. arbee@asia.edu.tw.