A Deep-Learning Framework for the Automated Recognition of Molecules in Scanning-Probe-Microscopy Images.

Journal: Angewandte Chemie (International ed. in English)
Published Date:

Abstract

Computer vision as a subcategory of deep learning tackles complex vision tasks by dealing with data of images. Molecular images with exceptionally high resolution have been achieved thanks to the development of techniques like scanning probe microscopy (SPM). However, extracting useful information from SPM image data requires careful analysis which heavily relies on human supervision. In this work, we develop a deep learning framework using an advanced computer vision algorithm, Mask R-CNN, to address the challenge of molecule detection, classification and instance segmentation in binary molecular nanostructures. We employ the framework to determine two triangular-shaped molecules of similar STM appearance. Our framework could accurately differentiate two molecules and label their positions. We foresee that the application of computer vision in SPM images will become an indispensable part in the field, accelerating data mining and the discovery of new materials.

Authors

  • Zhiwen Zhu
    Faculty of Engineering and Applied Science, Memorial University, St. John's, NL A1B 3X5, Canada. Electronic address: zhiwenz@mun.ca.
  • Jiayi Lu
    Hong Kong Baptist University, Hong Kong, China.
  • Fengru Zheng
    Materials Genome Institute, Shanghai University, 200444, Shanghai, China.
  • Cheng Chen
    Key Laboratory of Precision and Intelligent Chemistry, School of Chemistry and Materials Science, University of Science and Technology of China, China.
  • Yang Lv
  • Hao Jiang
    Drug Discovery and Design Center, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences , 555 Zuchongzhi Road, Shanghai 201203, China.
  • Yuyi Yan
    Materials Genome Institute, Shanghai University, 200444, Shanghai, China.
  • Akimitsu Narita
    Max Planck Institute for Polymer Research, 55128, Mainz, Germany.
  • Klaus Müllen
    Max Planck Institute for Polymer Research, 55128, Mainz, Germany.
  • Xiao-Ye Wang
    State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, 300071, Tianjin, China.
  • Qiang Sun
    Research Center for Agricultural and Sideline Products Processing, Henan Academy of Agricultural Sciences, 116 Park Road, Zhengzhou 450002, PR China.