Single-frame deep-learning super-resolution microscopy for intracellular dynamics imaging.

Journal: Nature communications
Published Date:

Abstract

Single-molecule localization microscopy (SMLM) can be used to resolve subcellular structures and achieve a tenfold improvement in spatial resolution compared to that obtained by conventional fluorescence microscopy. However, the separation of single-molecule fluorescence events that requires thousands of frames dramatically increases the image acquisition time and phototoxicity, impeding the observation of instantaneous intracellular dynamics. Here we develop a deep-learning based single-frame super-resolution microscopy (SFSRM) method which utilizes a subpixel edge map and a multicomponent optimization strategy to guide the neural network to reconstruct a super-resolution image from a single frame of a diffraction-limited image. Under a tolerable signal density and an affordable signal-to-noise ratio, SFSRM enables high-fidelity live-cell imaging with spatiotemporal resolutions of 30 nm and 10 ms, allowing for prolonged monitoring of subcellular dynamics such as interplays between mitochondria and endoplasmic reticulum, the vesicle transport along microtubules, and the endosome fusion and fission. Moreover, its adaptability to different microscopes and spectra makes it a useful tool for various imaging systems.

Authors

  • Rong Chen
    Department of Respiratory and Critical Care Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China.
  • Xiao Tang
    College of Computer Science and Technology, Jilin University, Jilin 130000, PR China.
  • Yuxuan Zhao
    School of Health Sciences and Engineering, University of Shanghai for Science and Technology, Shanghai, 200093, P. R. China.
  • Zeyu Shen
    Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong, China.
  • Meng Zhang
    College of Software, Beihang University, Beijing, China.
  • Yusheng Shen
    Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong, China.
  • Tiantian Li
    China CDC Key Laboratory of Environment and Population Health, National Institute of Environmental Health, Chinese Center for Disease Control and Prevention, Beijing 100021, People's Republic of China.
  • Casper Ho Yin Chung
    Department of Mechanical and Aerospace Engineering, The Hong Kong University of Science and Technology, Hong Kong, China.
  • Lijuan Zhang
    School of Computer Science and Engineering, Changchun University of Technology, Jilin 130012, China.
  • Ji Wang
    Department of Toxicology and Hygienic Chemistry, School of Public Health, Capital Medical University, Beijing 100069, China; Beijing Key Laboratory of Environmental Toxicology, Capital Medical University, Beijing 100069, China.
  • Binbin Cui
    Institute of Photoelectronic Thin Film Devices and Technology, Nankai University, Tianjin, 300350, P. R. China.
  • Peng Fei
    Department of Hematology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei, 430030, China.
  • Yusong Guo
    Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong, China. guoyusong@ust.hk.
  • Shengwang Du
    Department of Chemical and Biological Engineering, The Hong Kong University of Science and Technology, Hong Kong, China. dusw@utdallas.edu.
  • Shuhuai Yao
    Department of Chemical and Biological Engineering, The Hong Kong University of Science and Technology, Hong Kong, China. meshyao@ust.hk.