PiDeeL: metabolic pathway-informed deep learning model for survival analysis and pathological classification of gliomas.

Journal: Bioinformatics (Oxford, England)
PMID:

Abstract

MOTIVATION: Online assessment of tumor characteristics during surgery is important and has the potential to establish an intra-operative surgeon feedback mechanism. With the availability of such feedback, surgeons could decide to be more liberal or conservative regarding the resection of the tumor. While there are methods to perform metabolomics-based tumor pathology prediction, their model complexity predictive performance is limited by the small dataset sizes. Furthermore, the information conveyed by the feedback provided on the tumor tissue could be improved both in terms of content and accuracy.

Authors

  • Gun Kaynar
    Computer Engineering Department, Bilkent University, 06800 Ankara, Turkey.
  • Doruk Cakmakci
    Computer Engineering Department, Bilkent University, Ankara, Turkey.
  • Caroline Bund
    MNMS Platform, University Hospitals of Strasbourg, Strasbourg 67098, France.
  • Julien Todeschi
    Department of Neurosurgery, Strasbourg University Hospital, Strasbourg, France.
  • Izzie Jacques Namer
    MNMS Platform, University Hospitals of Strasbourg, Strasbourg, France.
  • A Ercument Cicek
    Department of Computer Engineering, Bilkent University, Ankara 06800, Turkey.