DIMOND: DIffusion Model OptimizatioN with Deep Learning.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)
PMID:

Abstract

Diffusion magnetic resonance imaging is an important tool for mapping tissue microstructure and structural connectivity non-invasively in the in vivo human brain. Numerous diffusion signal models are proposed to quantify microstructural properties. Nonetheless, accurate estimation of model parameters is computationally expensive and impeded by image noise. Supervised deep learning-based estimation approaches exhibit efficiency and superior performance but require additional training data and may be not generalizable. A new DIffusion Model OptimizatioN framework using physics-informed and self-supervised Deep learning entitled "DIMOND" is proposed to address this problem. DIMOND employs a neural network to map input image data to model parameters and optimizes the network by minimizing the difference between the input acquired data and synthetic data generated via the diffusion model parametrized by network outputs. DIMOND produces accurate diffusion tensor imaging results and is generalizable across subjects and datasets. Moreover, DIMOND outperforms conventional methods for fitting sophisticated microstructural models including the kurtosis and NODDI model. Importantly, DIMOND reduces NODDI model fitting time from hours to minutes, or seconds by leveraging transfer learning. In summary, the self-supervised manner, high efficacy, and efficiency of DIMOND increase the practical feasibility and adoption of microstructure and connectivity mapping in clinical and neuroscientific applications.

Authors

  • Zihan Li
    MicroPort(Shanghai) MedBot Co. Ltd, Shanghai, 200031.
  • Ziyu Li
    Gastrointestinal Cancer Center, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital and Institute, Beijing, China.
  • Berkin Bilgic
    Department of Radiology, Harvard Medical School, Boston, MA, USA.
  • Hong-Hsi Lee
    Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, 02129, USA.
  • Kui Ying
    Department of Engineering Physics, Tsinghua University, Beijing, 100084, P. R. China.
  • Susie Y Huang
    Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts.
  • Hongen Liao
  • Qiyuan Tian
    Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts.