DeepTree: Pathological Image Classification Through Imitating Tree-Like Strategies of Pathologists.

Journal: IEEE transactions on medical imaging
Published Date:

Abstract

Digitization of pathological slides has promoted the research of computer-aided diagnosis, in which artificial intelligence analysis of pathological images deserves attention. Appropriate deep learning techniques in natural images have been extended to computational pathology. Still, they seldom take into account prior knowledge in pathology, especially the analysis process of lesion morphology by pathologists. Inspired by the diagnosis decision of pathologists, we design a novel deep learning architecture based on tree-like strategies called DeepTree. It imitates pathological diagnosis methods, designed as a binary tree structure, to conditionally learn the correlation between tissue morphology, and optimizes branches to finetune the performance further. To validate and benchmark DeepTree, we build a dataset of frozen lung cancer tissues and design experiments on a public dataset of breast tumor subtypes and our dataset. Results show that the deep learning architecture based on tree-like strategies makes the pathological image classification more accurate, transparent, and convincing. Simultaneously, prior knowledge based on diagnostic strategies yields superior representation ability compared to alternative methods. Our proposed methodology helps improve the trust of pathologists in artificial intelligence analysis and promotes the practical clinical application of pathology-assisted diagnosis.

Authors

  • Jiawen Li
    Institute for Photonics and Advanced Sensing, The University of Adelaide Adelaide SA Australia.
  • Junru Cheng
    Institute of Biopharmaceutical and Health Engineering, Tsinghua Shenzhen International Graduate School, Shenzhen, Guangdong, China.
  • Lingqin Meng
  • Hui Yan
    School of Computer Science and Engineering, Nanjing University of Science and Technology, 210094, China. Electronic address: yanhui@mail.njust.edu.cn.
  • Yonghong He
    Institute of Biopharmaceutical and Health Engineering, Tsinghua Shenzhen International Graduate School, Shenzhen 518055, China.
  • Huijuan Shi
    Department of Pathology, The First Affiliated Hospital, Sun Yat-Sen University Guangzhou, China.
  • Tian Guan
    Key Laboratory of Food Quality and Safety of Guangdong Province, College of Food Science, South China Agricultural University, Guangzhou, 510642, China.
  • Anjia Han
    Department of Pathology, The First Affiliated Hospital, Sun Yat-Sen University Guangzhou, China.