AIMC Topic: Adenosine Diphosphate

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Prediction of protein mononucleotide binding sites using AlphaFold2 and machine learning.

Computational biology and chemistry Jul 23, 2022
In this study, we developed a system that predicts the binding sites of proteins for five mononucleotides (AMP, ADP, ATP, GDP, and GTP). The system comprises two machine learning (ML)-based predictors using a convolutional neural network and a gradie...
Machine Learning Protein Binding Proteins Adenosine Triphosphate Ligands Binding Sites Adenosine Diphosphate Adenosine Monophosphate
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Recognizing five molecular ligand-binding sites with similar chemical structure.

Journal of computational chemistry Oct 23, 2019
Accurate identification of ligand-binding sites and discovering the protein-ligand interaction mechanism are important for understanding proteins' functions and designing new drugs. Meanwhile, accurate computational prediction and mechanism research ...
Support Vector Machine Proteins Adenosine Triphosphate Ligands Binding Sites NAD Guanosine Triphosphate Adenosine Diphosphate Guanosine Diphosphate
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