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Biological Phenomena

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Reactome enhanced pathway visualization.

Bioinformatics (Oxford, England)
MOTIVATION: Reactome is a free, open-source, open-data, curated and peer-reviewed knowledge base of biomolecular pathways. Pathways are arranged in a hierarchical structure that largely corresponds to the GO biological process hierarchy, allowing the...

Nestedness across biological scales.

PloS one
Biological networks pervade nature. They describe systems throughout all levels of biological organization, from molecules regulating metabolism to species interactions that shape ecosystem dynamics. The network thinking revealed recurrent organizati...

Scaling Laws in City Growth: Setting Limitations with Self-Organizing Maps.

PloS one
Do scaling relations always provide the means to anticipate the relationships between the size of cities, costs of maintenance, and the socio-economic benefits resulting from their growth? Scaling laws are considered a universal principle that descri...