Research Note: A deep learning method segments chicken keel bones from whole-body X-ray images.

Journal: Poultry science
Published Date:

Abstract

Most commercial laying hens suffer from sternum (keel) bone damage including deviations and fractures. X-raying hens, followed by segmenting and assessing the keel bone, is a key to automating the monitoring of keel bone condition. The aim of the current work is to train a deep learning model to segment the keel bone out of whole-body x-ray images. We obtained full-body x-ray images of laying hens (n = 1,051) and manually drew the outline of the keel bone on each image. Using the annotated images, a U-net model was then trained to segment the keel bone. The proposed model was evaluated using 5-fold cross validation. We obtained high segmentation accuracy (Dice coefficients of 0.88-0.90) repeatably over several validation folds. In conclusion, automatic segmentation of the keel bone from full-body x-ray images is possible with good accuracy. Segmentation is a requirement for automated measurements of keel geometry and density, which can subsequently be connected to susceptibility to keel deviations and fractures.

Authors

  • Moh Sallam
    Department of Animal Biosciences, Swedish University of Agricultural Sciences, Box 7023, 750 07, Uppsala, Sweden.
  • Samuel Coulbourn Flores
    Department of Animal Biosciences, Swedish University of Agricultural Sciences, Box 7023, 750 07, Uppsala, Sweden; Department of Biochemistry and Biophysics, Stockholm University, Tomtebodavägen 23A, 171 65, Solna, Sweden.
  • Dirk Jan de Koning
    Department of Animal Biosciences, Swedish University of Agricultural Sciences, Box 7023, 750 07, Uppsala, Sweden.
  • Martin Johnsson
    Department of Animal Biosciences, Swedish University of Agricultural Sciences, Box 7023, 750 07, Uppsala, Sweden. Electronic address: martin.johnsson@slu.se.