Automated Deep Learning-Based Finger Joint Segmentation in 3-D Ultrasound Images With Limited Dataset.

Journal: Ultrasonic imaging
PMID:

Abstract

Ultrasound imaging has shown promise in assessing synovium inflammation associated early stages of rheumatoid arthritis (RA). The precise identification of the synovium and the quantification of inflammation-specific imaging biomarkers is a crucial aspect of accurately quantifying and grading RA. In this study, a deep learning-based approach is presented that automates the segmentation of the synovium in ultrasound images of finger joints affected by RA. Two convolutional neural network architectures for image segmentation were trained and validated in a limited number of 2-D images, extracted from  = 18 3-D ultrasound volumes acquired from  = 9 RA patients, with sparse ground truth annotations of the synovium. Various augmentation strategies were employed to enhance the diversity and size of the training dataset. The utilization of geometric and noise augmentation transforms resulted in the highest dice score (0.768 0.040,  = 6), as determined via six-fold cross-validation. In addition, the segmentation model is used to generate dense 3-D segmentation maps in the ultrasound volumes, based on the available sparse annotations. The developed technique shows promise in facilitating more efficient and standardized workflow for RA screening using ultrasound imaging.

Authors

  • Grigorios M Karageorgos
    Biomedical Engineering Department, Columbia University, New York, NY, United States of America.
  • Jianwei Qiu
    GE HealthCare, Troy, NY, USA.
  • Xiaorui Peng
    Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA.
  • Zhaoyuan Yang
    GE Healthcare Technology and Innovation Center, Niskayuna, NY, USA.
  • Soumya Ghose
    Case Western Reserve University, 10900 Euclid Avenue, Cleveland, OH 44106, United States.
  • Aaron Dentinger
    GE Healthcare Technology and Innovation Center, Niskayuna, NY, USA.
  • Zhanpeng Xu
  • Janggun Jo
    Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA.
  • Siddarth Ragupathi
    Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA.
  • Guan Xu
    Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA.
  • Nada Abdulaziz
    Division of Rheumatology, Department of Internal Medicine, University of Michigan, Ann Arbor, MI, USA.
  • Girish Gandikota
    Department of Radiology, University of Michigan, Ann Arbor, MI, USA.
  • Xueding Wang
    Institute of Clinical Pharmacology, School of Pharmaceutical Sciences, Sun Yat-sen University, Guangzhou 510060, China.
  • David Mills
    GE Healthcare Technology and Innovation Center, Niskayuna, NY, USA.