Antibiotic SERS spectral analysis based on data augmentation and attention mechanism strategy.

Journal: Analytical sciences : the international journal of the Japan Society for Analytical Chemistry
Published Date:

Abstract

The analysis of Raman spectrum data has gradually transitioned into the era of machine learning. However, it is still constrained by the challenge of acquiring large volumes of raw data and the issue of losing characteristic information from spectral data. In this paper, we propose a strategy that combines data amplification and attention mechanisms for analyzing antibiotic spectral data. Firstly, a Generative Adversarial Network was employed to amplify the SERS spectrum of eight antibiotics by 10 times, to augment the dataset to fulfill the requirements of the neural network. Then, the amplified data is input into a one-dimensional convolutional neural network with an attentional mechanism module, which enables a more accurate capture of spectral feature information. The one-dimensional convolutional neural network achieved a 97.5% accuracy in classifying eight antibiotics. The accuracy of the four mixtures within the same class was 89.4%.

Authors

  • Hang Zhao
    Department of Dermatology, Yueyang Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai 200437, China; Institute of Dermatology, Shanghai Academy of Traditional Chinese Medicine, Shanghai 201203, China.
  • Min Zhou
    Department of Respiratory and Critical Care Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China.
  • Chunlin Liu
    Optics and Optoelectronics Laboratory, Ocean University of China, Qingdao, 266100, People's Republic of China.
  • Hongheng Sun
    Optics and Optoelectronics Laboratory, Ocean University of China, Qingdao, 266100, People's Republic of China.
  • Panshuo Zhang
    Optics and Optoelectronics Laboratory, Ocean University of China, Qingdao, 266100, People's Republic of China.
  • Jun Ma
    State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin 150090, China.
  • Xiaofeng Shi
    Department of Infectious Diseases, Key Laboratory of Molecular Biology for Infectious Diseases (Ministry of Education), Institute for Viral Hepatitis, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, China.