Survival machine learning methods for mortality prediction after heart transplantation in the contemporary era.

Journal: PloS one
PMID:

Abstract

Although prediction models for heart transplantation outcomes have been developed previously, a comprehensive benchmarking of survival machine learning methods for mortality prognosis in the most contemporary era of heart transplants following the 2018 donor heart allocation policy change is warranted. This study assessed seven statistical and machine learning algorithms-Lasso, Ridge, Elastic Net, Cox Gradient Boost, Extreme Gradient Boost Linear, Extreme Gradient Boost Tree, and Random Survival Forests in a post-policy cohort of 7,160 adult heart-only transplant recipients in the Scientific Registry of Transplant Recipients (SRTR) database who received their first transplant on or after October 18, 2018. A cross-validation framework was designed in mlr. Model performance was also compared in a seasonally-matched pre-policy cohort. In the post-policy cohort, Random Survival Forests and Cox Gradient Boost had the highest performances with C-indices of 0.628 and 0.627. The relative importance of some predictive variables differed between the pre-policy and post-policy cohorts, such as the absence of ECMO in the post-policy cohort. Survival machine learning models provide reasonable prediction of 1-year posttransplant mortality outcomes and continual updating of prediction models is warranted in the contemporary era.

Authors

  • Lathan Liou
    Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, United States of America.
  • Elizabeth Mostofsky
    Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, United States of America.
  • Laura Lehman
    Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, United States of America.
  • Soziema Salia
    Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, United States of America.
  • Francisco J Barrera
    Department of Epidemiology, Harvard TH Chan School of Public Health, Boston, MA, United States.
  • Ying Wei
    School of Information Science and Engineering, Northeastern University, Shenyang 110004, China ; Key Laboratory of Medical Imaging Calculation of the Ministry of Education, Shenyang 110004, China.
  • Amal Cheema
    Harvard T.H. Chan School of Public Health, Cambridge, Massachusetts.
  • Anuradha Lala
    Department of Population Health Science and Policy, Icahn School of Medicine at Mount Sinai, New York, NY, United States.
  • Andrew Beam
    Department of Biomedical Informatics, Harvard Medical School, Boston, MA, United States of America; Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA, United States of America.
  • Murray A Mittleman
    Department of Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA.