The development of an efficient artificial intelligence-based classification approach for colorectal cancer response to radiochemotherapy: deep learning vs. machine learning.

Journal: Scientific reports
PMID:

Abstract

Colorectal cancer (CRC) is a form of cancer that impacts both the rectum and colon. Typically, it begins with a small abnormal growth known as a polyp, which can either be non-cancerous or cancerous. Therefore, early detection of colorectal cancer as the second deadliest cancer after lung cancer, can be highly beneficial. Moreover, the standard treatment for locally advanced colorectal cancer, which is widely accepted around the world, is chemoradiotherapy. Then, in this study, seven artificial intelligence models including decision tree, K-nearest neighbors, Adaboost, random forest, Gradient Boosting, multi-layer perceptron, and convolutional neural network were implemented to detect patients responder and non-responder to radiochemotherapy. For finding the potential predictors (genes), three feature selection strategies were employed including mutual information, F-classif, and Chi-Square. Based on feature selection models, four different scenarios were developed and five, ten, twenty and thirty features selected for designing a more accurate classification paradigm. The results of this study confirm that random forest, Gradient Boosting, decision tree, and K-nearest neighbors provided more accurate results in terms of accuracy, by 93.8%. Moreover, Among the feature selection methods, mutual information and F-classif showed the best results, while Chi-Square produced the worst results. Therefore, the suggested artificial intelligence models can be successfully applied as a robust approach for classification of colorectal cancer response to radiochemotherapy for medical studies.

Authors

  • Fatemeh Bahrambanan
    Research Center for Molecular Medicine, Hamadan University of Medical Sciences, Hamadan, Iran. fbahramibanan@yahoo.com.
  • Meysam Alizamir
    Department of Civil Engineering, Hamedan Branch, Islamic Azad University, Hamedan, Iran.
  • Kayhan Moradveisi
    Civil Engineering Department, University of Kurdistan, Sanandaj, Iran.
  • Salim Heddam
    Faculty of Science, Agronomy Department, Hydraulics Division, University 20 Août 1955 Skikda, Skikda, Algeri.
  • Sungwon Kim
    Department of Railroad Construction and Safety Engineering, Dongyang University, Yeongju, Republic of Korea.
  • Seunghyun Kim
    Department of Biology, University of California San Diego, San Diego, CA, 92093, USA.
  • Meysam Soleimani
    Department of Pharmaceutical Biotechnology, School of Pharmacy, Hamadan University of Medical Sciences, Hamadan, Iran.
  • Saeid Afshar
    Research Center for Molecular Medicine, Hamadan University of Medical Science, Hamadan, Iran.
  • Amir Taherkhani
    Research Center for Molecular Medicine, Hamadan University of Medical Sciences, Hamadan, Iran.