An Explainable Unified Framework of Spatio-Temporal Coupling Learning With Application to Dynamic Brain Functional Connectivity Analysis.

Journal: IEEE transactions on medical imaging
PMID:

Abstract

Time-series data such as fMRI and MEG carry a wealth of inherent spatio-temporal coupling relationship, and their modeling via deep learning is essential for uncovering biological mechanisms. However, current machine learning models for mining spatio-temporal information usually overlook this intrinsic coupling association, in addition to poor explainability. In this paper, we present an explainable learning framework for spatio-temporal coupling. Specifically, this framework constructs a deep learning network based on spatio-temporal correlation, which can well integrate the time-varying coupled relationships between node representation and inter-node connectivity. Furthermore, it explores spatio-temporal evolution at each time step, providing a better explainability of the analysis results. Finally, we apply the proposed framework to brain dynamic functional connectivity (dFC) analysis. Experimental results demonstrate that it can effectively capture the variations in dFC during brain development and the evolution of spatio-temporal information at the resting state. Two distinct developmental functional connectivity (FC) patterns are identified. Specifically, the connectivity among regions related to emotional regulation decreases, while the connectivity associated with cognitive activities increases. In addition, children and young adults display notable cyclic fluctuations in resting-state brain dFC.

Authors

  • Bin Gao
    Institute of Microelectronics, Tsinghua University, Beijing, 10084, China; Center for Brain-Inspired Computing Research, Tsinghua University, Beijing, 10084, China. Electronic address: gaob1@tsinghua.edu.cn.
  • Aiju Yu
  • Chen Qiao
    Beijing Traditional Chinese Medicine Office for Cancer Prevention and Control, Xiyuan Hospital, China Academy of Chinese Medical Science, Beijing, China.
  • Vince D Calhoun
    Mind Research Network & Lovelace Biomedical and Environmental Research Institute, Albuquerque, New Mexico; Department of Psychiatry and Behavioral Sciences, University of New Mexico, Albuquerque, New Mexico; Department of Electrical and Computer Engineering, University of New Mexico, Albuquerque, New Mexico; Department of Neurosciences, University of New Mexico, Albuquerque, New Mexico.
  • Julia M Stephen
  • Tony W Wilson
  • Yu-Ping Wang
    School of Science and Engineering and School of Public Health and Tropical Medicine, Tulane University, New Orleans, LA, United States.