A Generative Artificial Intelligence Copilot for Biomedical Nanoengineering.

Journal: ACS nano
Published Date:

Abstract

The recent success of large language models (LLMs) in performing natural language processing tasks has increased interest in applying generative artificial intelligence (AI) to scientific research. However, a common problem of LLMs is their tendency to produce inaccurate and sometimes "hallucinated" outputs. Here, we established a generative AI tool, NanoSafari, to automatically extract knowledge from the biomedical nanoscience literature and address scientific queries. We developed the Grouped Iterative Validation based Information Extraction (GIVE) method to extract contextual information on nanoparticle characteristics from >20,000 published articles and established a database that was incorporated into the generative LLM to provide accurate nanomaterial design parameters. Blinded evaluation by biomedical nanoscientists showed that NanoSafari outperformed the baseline model in providing more reliable parameters for nanomaterial design tasks, as further validated by bench experiments. Together, these findings demonstrate the utility of AI-based methods for automated learning from "real-world" published work to provide accurate and reliable scientific references for biomaterial and bioengineering applications.

Authors

  • Yifan Wang
    School of Bioscience and Bioengineering, South China University of Technology, Guangzhou, China.
  • Haitao Song
    Shanghai Artificial Intelligence Research Institute Co., Ltd, Shanghai, China.
  • Yue Teng
    Haidian Maternal & Child Health Hospital Nutrition Clinic, Beijing 100080, China.
  • Guan Huang
    School of Education, China West Normal University, Nanchong, Sichuan, China.
  • Jingzhe Qian
    SigmaSafari Project, Shanghai Artificial Intelligence Research Institute Co., Ltd., Shanghai 201109, China.
  • Hongyu Wang
    School of Information Science and Technology, Northwest University, Xi'an, Shaanxi, China.
  • Shiyan Dong
    Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
  • JongHoon Ha
    Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, United States.
  • Yifan Ma
    Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, United States.
  • Mengyu Chang
    Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, United States.
  • Seong Dong Jeong
    Department of Neurosurgery, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, United States.
  • Weiye Deng
    Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, United States.
  • Benjamin R Schrank
    Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, United States.
  • Adam Grippin
    Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, United States.
  • Annette Wu
    Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, United States.
  • Jared L Edwards
    Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, United States.
  • Yixiang Zhang
    Weifang Medical University, Weifang, China.
  • Yuanyuan Lin
    Weifang Hospital of Traditional Chinese Medicine, 1055 Weizhou Road, Weifang 261042, China.
  • Wilson Poon
    Department of Metallurgical, Materials and Biomedical Engineering, The University of Texas El Paso, El Paso, Texas 79968, United States.
  • Stefan Wilhelm
    Stephenson School of Biomedical Engineering, University of Oklahoma, Norman, OK 73072, USA.
  • Ye Bi
    The Public Experimental Center, Changchun University of Chinese Medicine, Changchun 130117, China.
  • Lesheng Teng
    School of Life Science, Jilin University, Changchun 130012, China.
  • Zikai Wang
    Shanghai Artificial Intelligence Research Institute Co., Ltd, Shanghai, China.
  • Betty Y S Kim
    Department of Neurosurgery, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, United States.
  • Wen Jiang
    School of Electronics and Information, Northwestern Polytechnical University, Xi'an, Shaanxi 710072, P.R. China.