Characterizing ASD Subtypes Using Morphological Features from sMRI with Unsupervised Learning.

Journal: Studies in health technology and informatics
Published Date:

Abstract

In this study, we attempted to identify the subtypes of autism spectrum disorder (ASD) with the help of anatomical alterations found in structural magnetic resonance imaging (sMRI) data of the ASD brain and machine learning tools. Initially, the sMRI data was preprocessed using the FreeSurfer toolbox. Further, the brain regions were segmented into 148 regions of interest using the Destrieux atlas. Features such as volume, thickness, surface area, and mean curvature were extracted for each brain region. We performed principal component analysis independently on the volume, thickness, surface area, and mean curvature features and identified the top 10 features. Further, we applied k-means clustering on these top 10 features and validated the number of clusters using Elbow and Silhouette method. Our study identified two clusters in the dataset which significantly shows the existence of two subtypes in ASD. We identified the features such as volume of scaled lh_G_front middle, thickness of scaled rh_S_temporal transverse, area of scaled lh_S_temporal sup, and mean curvature of scaled lh_G_precentral as the significant features discriminating the two clusters with statistically significant p-value (p<0.05). Thus, our proposed method is effective for the identification of ASD subtypes and can also be useful for the screening of other similar neurological disorders.

Authors

  • Ayush Raj
    Computational Neuroscience and Biology Lab, School of Biomedical Engineering, Indian Institute of Technology (BHU), Varanasi, Uttar Pradesh, India.
  • Ravi Ratnaik
    Computational Neuroscience and Biology Lab, School of Biomedical Engineering, Indian Institute of Technology (BHU), Varanasi, Uttar Pradesh, India.
  • Sandeep Singh Sengar
    Department of Computer Science, Cardiff Metropolitan University, Cardiff, United Kingdom.
  • Agastinose Ronickom Jac Fredo
    Computational Neuroscience and Biology Lab, School of Biomedical Engineering, Indian Institute of Technology (BHU), Varanasi, Uttar Pradesh, India.