Rational Design of Safer Inorganic Nanoparticles via Mechanistic Modeling-Informed Machine Learning.

Journal: ACS nano
Published Date:

Abstract

The safety of inorganic nanoparticles (NPs) remains a critical challenge for their clinical translation. To address this, we developed a machine learning (ML) framework that predicts NP toxicity both and , leveraging physicochemical properties and experimental conditions. A curated cytotoxicity dataset was used to train and validate binary classification models, with top-performing models undergoing explainability analysis to identify key determinants of toxicity and establish structure-toxicity relationships. External testing with diverse inorganic NPs validated the predictive accuracy of the framework for settings. To enable organ-specific toxicity predictions , we integrated a physiologically based pharmacokinetic (PBPK) model into the ML pipeline to quantify NP exposure across organs. Retraining the ML models with PBPK-derived exposure metrics yielded robust predictions of organ-specific nanotoxicity, further validating the framework. This PBPK-informed ML approach can thus serve as a potential alternative approach to streamline NP safety assessment, enabling the rational design of safer NPs and expediting their clinical translation.

Authors

  • Joseph Cave
    Mathematics in Medicine Program, Department of Medicine, Houston Methodist Research Institute, Houston, Texas 77030, United States.
  • Anne Christiono
    Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States.
  • Carmine Schiavone
    Mathematics in Medicine Program, Department of Medicine, Houston Methodist Research Institute, Houston, Texas 77030, United States.
  • Henry J Pownall
    Department of Medicine, Houston Methodist, Houston, Texas 77030, United States.
  • Vittorio Cristini
    Mathematics in Medicine Program, Houston Methodist Research Institute, Houston, TX, USA.
  • Daniela I Staquicini
    Rutgers Cancer Institute, Newark, New Jersey 08901, United States.
  • Renata Pasqualini
    From the Research Collaboratory for Structural Bioinformatics Protein Data Bank, the Institute for Quantitative Biomedicine, and the Department of Chemistry and Chemical Biology, Rutgers, the State University of New Jersey (S.K.B.), and the Rutgers Cancer Institute of New Jersey, New Brunswick (S.K.B.) and Newark (W.A., R.P.); and the Division of Hematology-Oncology, Department of Medicine (W.A.), and the Division of Cancer Biology, Department of Radiation Oncology (R.P.), Rutgers New Jersey Medical School, Newark; and the Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California, San Diego, San Diego (S.K.B.).
  • Wadih Arap
    From the Research Collaboratory for Structural Bioinformatics Protein Data Bank, the Institute for Quantitative Biomedicine, and the Department of Chemistry and Chemical Biology, Rutgers, the State University of New Jersey (S.K.B.), and the Rutgers Cancer Institute of New Jersey, New Brunswick (S.K.B.) and Newark (W.A., R.P.); and the Division of Hematology-Oncology, Department of Medicine (W.A.), and the Division of Cancer Biology, Department of Radiation Oncology (R.P.), Rutgers New Jersey Medical School, Newark; and the Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California, San Diego, San Diego (S.K.B.).
  • C Jeffrey Brinker
    Department of Chemical and Biological Engineering, University of New Mexico, Albuquerque, New Mexico 87106, United States.
  • Matthew Campen
    College of Pharmacy, University of New Mexico, Albuquerque, New Mexico 87106, United States.
  • Zhihui Wang
  • Hien Van Nguyen
    Department of Electrical and Computer Engineering, University of Houston, Houston, TX, 77004, USA.
  • Achraf Noureddine
    Department of Chemical and Biological Engineering, University of New Mexico, Albuquerque, New Mexico 87106, United States.
  • Prashant Dogra
    Mathematics in Medicine Program, Houston Methodist Research Institute, Houston, TX, USA.