Unsupervised learning for labeling global glomerulosclerosis.

Journal: Computers in biology and medicine
Published Date:

Abstract

BACKGROUND: Labeling images for supervised learning in nephropathology is highly time-consuming and dependent on domain-expertise. Unsupervised strategies have been suggested for mitigating this bottleneck. For instance, previous work suggested that clustering/grouping of glomeruli based on image features might enable a more semi-automated labeling of morphological classes or even a completely unsupervised training. However, even for the most basic separation between globally sclerosed and non-globally sclerosed glomeruli, the performance of clustering approaches has not yet been fully elucidated. The current study sought to fill this gap by extensively evaluating the accuracy and limitations of capturing these two classes via clustering.

Authors

  • Hrafn Weishaupt
    Department of Pathology, Haukeland University Hospital, Post Office Box 1400, 5021, Bergen, Norway.
  • Justinas Besusparis
    Department of Pathology, Haukeland University Hospital, Bergen, 5021, Norway.
  • Cleo-Aron Weis
    Institute of Pathology, University Medical Center Mannheim, Mannheim, Germany.
  • Stefan Porubsky
    Institute of Pathology, University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany.
  • Arvydas Laurinavicius
    Department of Pathology, Forensic Medicine and Pharmacology, Institute of Biomedical Sciences of the Faculty of Medicine of Vilnius University, Vilnius, Lithuania; National Center of Pathology, Affiliate of Vilnius University Hospital Santaros Klinikos, Vilnius, Lithuania. Electronic address: arvydas.laurinavicius@vpc.lt.
  • Sabine Leh
    European Society of Digital and Integrative Pathology (ESDIP), Lisboa, Portugal; Department of Pathology, Haukeland University Hospital, Bergen, Norway; Department of Clinical Medicine, University of Bergen, Bergen, Norway.