Computer-Assisted Diagnostic Coding: Effectiveness of an NLP-based approach using SNOMED CT to ICD-10 mappings.

Journal: AMIA ... Annual Symposium proceedings. AMIA Symposium
Published Date:

Abstract

Computer-assisted (diagnostic) coding (CAC) aims to improve the operational productivity and accuracy of clinical coders. The level of accuracy, especially for a wide range of complex and less prevalent clinical cases, remains an open research problem. This study investigates this problem on a broad spectrum of diagnostic codes and, in particular, investigates the effectiveness of utilising SNOMED CT for ICD-10 diagnosis coding. Hospital progress notes were used to provide the narrative rich electronic patient records for the investigation. A natural language processing (NLP) approach using mappings between SNOMED CT and ICD-10-AM (Australian Modification) was used to guide the coding. The proposed approach achieved 54.1% sensitivity and 70.2% positive predictive value. Given the complexity of the task, this was encouraging given the simplicity of the approach and what was projected as possible from a manual diagnosis code validation study (76.3% sensitivity). The results show the potential for advanced NLP-based approaches that leverage SNOMED CT to ICD-10 mapping for hospital in-patient coding.

Authors

  • Anthony N Nguyen
    The Australian e-Health Research Centre, CSIRO, Brisbane, Australia.
  • Donna Truran
    Australian e-Health Research Centre, CSIRO, Royal Brisbane and Women's Hospital, Brisbane, Australia.
  • Madonna Kemp
    Australian e-Health Research Centre, CSIRO, Royal Brisbane and Women's Hospital, Brisbane, Australia.
  • Bevan Koopman
    Australian e-Health Research Centre, CSIRO, Brisbane, QLD, Australia; Queensland University of Technology, Brisbane, QLD, Australia.
  • David Conlan
    The Australian e-Health Research Centre, CSIRO, Brisbane/Sydney/Perth, Australia.
  • John O'Dwyer
    The Australian e-Health Research Centre, CSIRO, Brisbane, Australia.
  • Ming Zhang
    Heilongjiang Key Laboratory for Laboratory Animals and Comparative Medicine, College of Veterinary Medicine, Harbin 150030, China.
  • Sarvnaz Karimi
    Australian e-Health Research Centre, CSIRO, Royal Brisbane and Women's Hospital, Brisbane, Australia.
  • Hamed Hassanzadeh
    Australian e-Health Research Centre, CSIRO, Brisbane, QLD, Australia.
  • Michael J Lawley
    The Australian e-Health Research Centre, CSIRO, Brisbane/Sydney/Perth, Australia.
  • Damian Green
    Gold Coast Hospital and Health Service, Department of Health, Queensland Government, Gold Coast, Australia.