Deep learning-based selection of human sperm with high DNA integrity.

Journal: Communications biology
PMID:

Abstract

Despite the importance of sperm DNA to human reproduction, currently no method exists to assess individual sperm DNA quality prior to clinical selection. Traditionally, skilled clinicians select sperm based on a variety of morphological and motility criteria, but without direct knowledge of their DNA cargo. Here, we show how a deep convolutional neural network can be trained on a collection of ~1000 sperm cells of known DNA quality, to predict DNA quality from brightfield images alone. Our results demonstrate moderate correlation (bivariate correlation ~0.43) between a sperm cell image and DNA quality and the ability to identify higher DNA integrity cells relative to the median. This deep learning selection process is directly compatible with current, manual microscopy-based sperm selection and could assist clinicians, by providing rapid DNA quality predictions (under 10 ms per cell) and sperm selection within the 86 percentile from a given sample.

Authors

  • Christopher McCallum
    1Department of Mechanical and Industrial Engineering, University of Toronto, 5 King's College Road, Toronto, ON Canada M5S 3G8.
  • Jason Riordon
    Department of Mechanical and Industrial Engineering, University of Toronto, Toronto, ON, Canada.
  • Yihe Wang
    1Department of Mechanical and Industrial Engineering, University of Toronto, 5 King's College Road, Toronto, ON Canada M5S 3G8.
  • Tian Kong
    1Department of Mechanical and Industrial Engineering, University of Toronto, 5 King's College Road, Toronto, ON Canada M5S 3G8.
  • Jae Bem You
    1Department of Mechanical and Industrial Engineering, University of Toronto, 5 King's College Road, Toronto, ON Canada M5S 3G8.
  • Scott Sanner
    Department of Mechanical and Industrial Engineering, University of Toronto, Ontario, Canada.
  • Alexander Lagunov
    Hannam Fertility Centre, 160 Bloor St. East, Toronto, ON Canada M4W 3R2.
  • Thomas G Hannam
    Hannam Fertility Centre, 160 Bloor St. East, Toronto, ON Canada M4W 3R2.
  • Keith Jarvi
  • David Sinton
    Department of Mechanical and Industrial Engineering, University of Toronto, Toronto, ON, Canada; http://www.sintonlab.com/.