The assessment of efficient representation of drug features using deep learning for drug repositioning.

Journal: BMC bioinformatics
Published Date:

Abstract

BACKGROUND: De novo drug discovery is a time-consuming and expensive process. Nowadays, drug repositioning is utilized as a common strategy to discover a new drug indication for existing drugs. This strategy is mostly used in cases with a limited number of candidate pairs of drugs and diseases. In other words, they are not scalable to a large number of drugs and diseases. Most of the in-silico methods mainly focus on linear approaches while non-linear models are still scarce for new indication predictions. Therefore, applying non-linear computational approaches can offer an opportunity to predict possible drug repositioning candidates.

Authors

  • Mahroo Moridi
    Department of Mathematics and Computer Science, Amirkabir University of Technology, (Tehran Polytechnic), Tehran, Iran.
  • Marzieh Ghadirinia
    Department of Computer Engineering, Sharif University of Technology, Tehran, Iran.
  • Ali Sharifi-Zarchi
    Department of Stem Cells and Developmental Biology, Cell Science Research Center, Royan Institute for Stem Cell Biology and Technology, ACECR, Tehran, Iran.
  • Fatemeh Zare-Mirakabad
    Department of Mathematics and Computer Science, Amirkabir University of Technology, (Tehran Polytechnic), Tehran, Iran. f.zare@aut.ac.ir.