Intelligent image-activated cell sorting 2.0.

Journal: Lab on a chip
Published Date:

Abstract

The advent of intelligent image-activated cell sorting (iIACS) has enabled high-throughput intelligent image-based sorting of single live cells from heterogeneous populations. iIACS is an on-chip microfluidic technology that builds on a seamless integration of a high-throughput fluorescence microscope, cell focuser, cell sorter, and deep neural network on a hybrid software-hardware data management architecture, thereby providing the combined merits of optical microscopy, fluorescence-activated cell sorting (FACS), and deep learning. Here we report an iIACS machine that far surpasses the state-of-the-art iIACS machine in system performance in order to expand the range of applications and discoveries enabled by the technology. Specifically, it provides a high throughput of ∼2000 events per second and a high sensitivity of ∼50 molecules of equivalent soluble fluorophores (MESFs), both of which are 20 times superior to those achieved in previous reports. This is made possible by employing (i) an image-sensor-based optomechanical flow imaging method known as virtual-freezing fluorescence imaging and (ii) a real-time intelligent image processor on an 8-PC server equipped with 8 multi-core CPUs and GPUs for intelligent decision-making, in order to significantly boost the imaging performance and computational power of the iIACS machine. We characterize the iIACS machine with fluorescent particles and various cell types and show that the performance of the iIACS machine is close to its achievable design specification. Equipped with the improved capabilities, this new generation of the iIACS technology holds promise for diverse applications in immunology, microbiology, stem cell biology, cancer biology, pathology, and synthetic biology.

Authors

  • Akihiro Isozaki
    Department of Chemistry, The University of Tokyo, Tokyo, Japan.
  • Hideharu Mikami
    Department of Chemistry, The University of Tokyo, Tokyo, Japan.
  • Hiroshi Tezuka
  • Hiroki Matsumura
  • Kangrui Huang
  • Marino Akamine
  • Kotaro Hiramatsu
    Department of Chemistry, The University of Tokyo, Tokyo, Japan.
  • Takanori Iino
    Department of Electrical Engineering and Information Systems, The University of Tokyo, Tokyo, Japan.
  • Takuro Ito
  • Hiroshi Karakawa
  • Yusuke Kasai
    Department of Micro-Nano Mechanical Science and Engineering, Nagoya University, Nagoya, Japan.
  • Yan Li
    Interdisciplinary Research Center for Biology and Chemistry, Liaoning Normal University, Dalian, China.
  • Yuta Nakagawa
  • Shinsuke Ohnuki
  • Tadataka Ota
  • Yong Qian
  • Shinya Sakuma
    Department of Micro-Nano Mechanical Science and Engineering, Nagoya University, Nagoya, Aichi, Japan. arai@mech.nagoya-u.ac.jp.
  • Takeichiro Sekiya
  • Yoshitaka Shirasaki
    Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.
  • Nobutake Suzuki
    Department of Biological Sciences, The University of Tokyo, Tokyo, Japan.
  • Ehsen Tayyabi
  • Tsubasa Wakamiya
  • Muzhen Xu
  • Mai Yamagishi
  • Haochen Yan
  • Qiang Yu
    State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling 712100, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China. Electronic address: yuq@nwsuaf.edu.cn.
  • Sheng Yan
    Department of Chemistry, University of Tokyo, Tokyo, Japan.
  • Dan Yuan
  • Wei Zhang
    The First Affiliated Hospital of Nanchang University, Nanchang, China.
  • Yaqi Zhao
  • Fumihito Arai
    Department of Micro-Nano Mechanical Science and Engineering, Nagoya University, Nagoya, Aichi, Japan. arai@mech.nagoya-u.ac.jp.
  • Robert E Campbell
  • Christophe Danelon
  • Dino Di Carlo
    2Department of Bioengineering, University of California, 420 Westwood Plaza, 5121 Engineering V, PO Box 951600, Los Angeles, CA 90095 USA.
  • Kei Hiraki
    Department of Chemistry, The University of Tokyo, Tokyo, Japan.
  • Yu Hoshino
    Department of Chemical Engineering, Kyushu University, Fukuoka, Japan.
  • Yoichiroh Hosokawa
    Division of Materials Science, Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma, Japan.
  • Mary Inaba
  • Atsuhiro Nakagawa
  • Yoshikazu Ohya
  • Minoru Oikawa
  • Sotaro Uemura
    Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.
  • Yasuyuki Ozeki
  • Takeaki Sugimura
    Department of Chemistry, The University of Tokyo, Tokyo, Japan.
  • Nao Nitta
  • Keisuke Goda