DL4papers: a deep learning approach for the automatic interpretation of scientific articles.

Journal: Bioinformatics (Oxford, England)
Published Date:

Abstract

MOTIVATION: In precision medicine, next-generation sequencing and novel preclinical reports have led to an increasingly large amount of results, published in the scientific literature. However, identifying novel treatments or predicting a drug response in, for example, cancer patients, from the huge amount of papers available remains a laborious and challenging work. This task can be considered a text mining problem that requires reading a lot of academic documents for identifying a small set of papers describing specific relations between key terms. Due to the infeasibility of the manual curation of these relations, computational methods that can automatically identify them from the available literature are urgently needed.

Authors

  • L A Bugnon
    Research Institute for Signals, Systems and Computational Intelligence, sinc(i), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina.
  • C Yones
    Research Institute for Signals, Systems and Computational Intelligence, sinc(i), UNL-CONICET. Ciudad Universitaria, 4to piso FICH, Santa Fe 3000, Argentina.
  • J Raad
    Research Institute for Signals, Systems and Computational Intelligence, sinc(i), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina.
  • M Gerard
    Research Institute for Signals, Systems and Computational Intelligence, sinc(i), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina.
  • M Rubiolo
    Research Institute for Signals, Systems and Computational Intelligence, sinc(i), FICH/UNL-CONICET, Ciudad Universitaria, 3000 Santa Fe, Argentina.
  • G Merino
    Research Institute for Signals, Systems and Computational Intelligence, sinc(i), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina.
  • M Pividori
    Research Institute for Signals, Systems and Computational Intelligence, sinc(i), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina.
  • L Di Persia
    Research Institute for Signals, Systems and Computational Intelligence, sinc(i), FICH/UNL-CONICET, Ciudad Universitaria, Santa Fe 3000, Argentina.
  • D H Milone
    Research Institute for Signals, Systems and Computational Intelligence, sinc(i), UNL-CONICET. Ciudad Universitaria, 4to piso FICH, Santa Fe 3000, Argentina.
  • G Stegmayer
    Research Institute for Signals, Systems and Computational Intelligence, sinc(i), UNL-CONICET. Ciudad Universitaria, 4to piso FICH, Santa Fe 3000, Argentina.