HyperKvasir, a comprehensive multi-class image and video dataset for gastrointestinal endoscopy.

Journal: Scientific data
Published Date:

Abstract

Artificial intelligence is currently a hot topic in medicine. However, medical data is often sparse and hard to obtain due to legal restrictions and lack of medical personnel for the cumbersome and tedious process to manually label training data. These constraints make it difficult to develop systems for automatic analysis, like detecting disease or other lesions. In this respect, this article presents HyperKvasir, the largest image and video dataset of the gastrointestinal tract available today. The data is collected during real gastro- and colonoscopy examinations at Bærum Hospital in Norway and partly labeled by experienced gastrointestinal endoscopists. The dataset contains 110,079 images and 374 videos, and represents anatomical landmarks as well as pathological and normal findings. The total number of images and video frames together is around 1 million. Initial experiments demonstrate the potential benefits of artificial intelligence-based computer-assisted diagnosis systems. The HyperKvasir dataset can play a valuable role in developing better algorithms and computer-assisted examination systems not only for gastro- and colonoscopy, but also for other fields in medicine.

Authors

  • Hanna Borgli
    SimulaMet, Oslo, Norway.
  • Vajira Thambawita
    SimulaMet, Oslo, Norway.
  • Pia H Smedsrud
    SimulaMet, Oslo, Norway.
  • Steven Hicks
    SimulaMet, Oslo, Norway.
  • Debesh Jha
    Department of Information and Communication Engineering, Chosun University, 309 Pilmun-Daero, Dong-Gu, Gwangju 61452, Republic of Korea.
  • Sigrun L Eskeland
    Department of Medical Research, Bærum Hospital, Bærum, Norway.
  • Kristin Ranheim Randel
    University of Oslo, Oslo, Norway.
  • Konstantin Pogorelov
    Simula Research Laboratory, Oslo, Norway.
  • Mathias Lux
    Klagenfurt University, Klagenfurt, Austria.
  • Duc Tien Dang Nguyen
    University of Bergen, Bergen, Norway.
  • Dag Johansen
    UIT The Arctic University of Norway, Tromsø, Norway.
  • Carsten Griwodz
    University of Oslo, Oslo, Norway.
  • Håkon K Stensland
    University of Oslo, Oslo, Norway.
  • Enrique Garcia-Ceja
    SINTEF Digital, Oslo, Norway.
  • Peter T Schmidt
    Department of Medicine (Solna), Karolinska Institutet, Stockholm, Sweden.
  • Hugo L Hammer
    Department of Computer Science, Oslo Metropolitan University, Oslo, Norway.
  • Michael A Riegler
    SimulaMet, Oslo, Norway.
  • Pål Halvorsen
    Center for Digital Engineering Simula Metropolitan, Fornebu 1364, Norway.
  • Thomas de Lange
    Department of Transplantation, Oslo University Hospital, Oslo 0424, Norway.