Esophagus segmentation from planning CT images using an atlas-based deep learning approach.

Journal: Computer methods and programs in biomedicine
Published Date:

Abstract

BACKGROUND AND OBJECTIVE: One of the main steps in the planning of radiotherapy (RT) is the segmentation of organs at risk (OARs) in Computed Tomography (CT). The esophagus is one of the most difficult OARs to segment. The boundaries between the esophagus and other surrounding tissues are not well-defined, and it is presented in several slices of the CT. Thus, manually segment the esophagus requires a lot of experience and takes time. This difficulty in manual segmentation combined with fatigue due to the number of slices to segment can cause human errors. To address these challenges, computational solutions for analyzing medical images and proposing automated segmentation have been developed and explored in recent years. In this work, we propose a fully automatic method for esophagus segmentation for better planning of radiotherapy in CT.

Authors

  • João Otávio Bandeira Diniz
    Federal University of Maranhão - UFMA Applied Computing Group - NCA Av. dos Portugueses, SN, Bacanga, MA, São Luís, 65085-580, Brazil. Electronic address: joao.obd@gmail.com.
  • Jonnison Lima Ferreira
    Applied Computing Group (NCA - UFMA), Federal University of Maranhao, Brazil.
  • Pedro Henrique Bandeira Diniz
    Pontifical Catholic University of Rio de Janeiro - PUC - RioR. São Vicente, 225, Gávea, RJ, Rio de Janeiro, 22453-900, Brazil. Electronic address: pedro_hbd@hotmail.com.
  • Aristófanes Corrêa Silva
    Federal University of Maranhão - UFMA, Applied Computing Group - NCA/UFMA, Av. dos Portugueses, SN, Campus do Bacanga, Bacanga 65085-580, São Luís, MA, Brazil. Electronic address: ari@dee.ufma.br.
  • Anselmo Cardoso de Paiva
    Applied Computing Group - NCA, Federal University of Maranhão - UFMA, Av. dos Portugueses, SN, Campus do Bacanga, Bacanga, São Luís, MA, 65085-580, Brazil.