Establishing a consensus for the hallmarks of cancer based on gene ontology and pathway annotations.

Journal: BMC bioinformatics
Published Date:

Abstract

BACKGROUND: The hallmarks of cancer provide a highly cited and well-used conceptual framework for describing the processes involved in cancer cell development and tumourigenesis. However, methods for translating these high-level concepts into data-level associations between hallmarks and genes (for high throughput analysis), vary widely between studies. The examination of different strategies to associate and map cancer hallmarks reveals significant differences, but also consensus.

Authors

  • Yi Chen
    Department of Anesthesiology and Perioperative Medicine, General Hospital of Ningxia Medical University, Yinchuan, China.
  • Fons J Verbeek
  • Katherine Wolstencroft
    The Leiden Institute of Advanced Computer Science (LIACS), Snellius Gebouw, Niels Bohrweg 1, Leiden, The Netherlands.