An ensemble learning method based on ordinal regression for COVID-19 diagnosis from chest CT.

Journal: Physics in medicine and biology
Published Date:

Abstract

Coronavirus disease 2019 (COVID-19) has brought huge losses to the world, and it remains a great threat to public health. X-ray computed tomography (CT) plays a central role in the management of COVID-19. Traditional diagnosis with pulmonary CT images is time-consuming and error-prone, which could not meet the need for precise and rapid COVID-19 screening. Nowadays, deep learning (DL) has been successfully applied to CT image analysis, which assists radiologists in workflow scheduling and treatment planning for patients with COVID-19. Traditional methods use cross-entropy as the loss function with a Softmax classifier following a fully-connected layer. Most DL-based classification methods target intraclass relationships in a certain class (early, progressive, severe, or dissipative phases), ignoring the natural order of different phases of the disease progression,from an early stage and progress to a late stage. To learn both intraclass and interclass relationships among different stages and improve the accuracy of classification, this paper proposes an ensemble learning method based on ordinal regression, which leverages the ordinal information on COVID-19 phases. The proposed method uses multi-binary, neuron stick-breaking (NSB), and soft labels (SL) techniques, and ensembles the ordinal outputs through a median selection. To evaluate our method, we collected 172 confirmed cases. In a 2-fold cross-validation experiment, the accuracy is increased by 22% compared with traditional methods when we use modified ResNet-18 as the backbone. And precision, recall, and1-score are also improved. The experimental results show that our proposed method achieves a better classification performance than the traditional methods, which helps establish guidelines for the classification of COVID-19 chest CT images.

Authors

  • Xiaodong Guo
    The Key Lab of Optoelectronic Technology and Systems of the Education Ministry of China, Chongqing University, Chongqing, China.
  • Yiming Lei
    Shanghai Key Laboratory of Intelligent Information Processing, School of Computer Science, Fudan University, Shanghai 200433, China.
  • Peng He
    Key Laboratory of Sensor Analysis of Tumor Marker, Ministry of Education, College of Chemistry and Molecular Engineering, Qingdao University of Science and Technology, Qingdao 266042, PR China.
  • Wenbing Zeng
    Radiology Department, Chongqing University Three Gorges Hospital, Chongqing 404000, People's Republic of China.
  • Ran Yang
    Radiology Department, Chongqing University Three Gorges Hospital, Chongqing 404000, People's Republic of China.
  • Yinjin Ma
    Key Laboratory of Optoelectronic Technology and Systems, Ministry of Education, Chongqing University, Chongqing 400044, People's Republic of China.
  • Peng Feng
    The Key Lab of Optoelectronic Technology and Systems of the Education Ministry of China, Chongqing University, Chongqing, China.
  • Qing Lyu
  • Ge Wang
    Biomedical Imaging Center, Rensselaer Polytechnic Institute, Troy, New York, USA.
  • Hongming Shan