A pre-trained BERT for Korean medical natural language processing.

Journal: Scientific reports
Published Date:

Abstract

With advances in deep learning and natural language processing (NLP), the analysis of medical texts is becoming increasingly important. Nonetheless, despite the importance of processing medical texts, no research on Korean medical-specific language models has been conducted. The Korean medical text is highly difficult to analyze because of the agglutinative characteristics of the language, as well as the complex terminologies in the medical domain. To solve this problem, we collected a Korean medical corpus and used it to train the language models. In this paper, we present a Korean medical language model based on deep learning NLP. The model was trained using the pre-training framework of BERT for the medical context based on a state-of-the-art Korean language model. The pre-trained model showed increased accuracies of 0.147 and 0.148 for the masked language model with next sentence prediction. In the intrinsic evaluation, the next sentence prediction accuracy improved by 0.258, which is a remarkable enhancement. In addition, the extrinsic evaluation of Korean medical semantic textual similarity data showed a 0.046 increase in the Pearson correlation, and the evaluation for the Korean medical named entity recognition showed a 0.053 increase in the F1-score.

Authors

  • Yoojoong Kim
    School of Electrical Engineering, Korea University, Seoul, South Korea.
  • Jong-Ho Kim
    Korea University Research Institute for Medical Bigdata Science, Korea University, Seoul, Korea.
  • Jeong Moon Lee
    Korea University Research Institute for Medical Bigdata Science, Korea University, Seoul, Korea.
  • Moon Joung Jang
    Korea University Research Institute for Medical Bigdata Science, Korea University, Seoul, Republic of Korea.
  • Yun Jin Yum
    Korea University Research Institute for Medical Bigdata Science, Korea University, Seoul, Republic of Korea.
  • Seongtae Kim
    Department of Linguistics, Korea University, Seoul, Republic of Korea.
  • Unsub Shin
    Department of Linguistics, Korea University, Seoul, Republic of Korea.
  • Young-Min Kim
    College of Pharmacy, Chonnam National University, Gwangju 61186, Republic of Korea. Electronic address: u9897854@jnu.ac.kr.
  • Hyung Joon Joo
    Department of Radiology (J.Y.L., Y.W.O., S.H.H.) and Division of Cardiology, Department of Internal Medicine (D.S.L., C.W.Y., J.H.P., H.J.J.), Korea University Anam Hospital, 73 Inchon-ro, Seongbuk-gu, Seoul 02841, Republic of Korea; Department of Radiology, Korea University Guro Hospital, Seoul, Republic of Korea (H.S.Y., E.Y.K.); and Department of Radiology, Korea University Ansan Hospital, Ansan, Republic of Korea (C.K., K.Y.L.).
  • Sanghoun Song
    Department of Linguistics, Korea University, Seoul, Republic of Korea. sanghoun@korea.ac.kr.