Uncovering Brain Differences in Preschoolers and Young Adolescents with Autism Spectrum Disorder Using Deep Learning.

Journal: International journal of neural systems
Published Date:

Abstract

Identifying brain abnormalities in autism spectrum disorder (ASD) is critical for early diagnosis and intervention. To explore brain differences in ASD and typical development (TD) individuals by detecting structural features using T1-weighted magnetic resonance imaging (MRI), we developed a deep learning-based approach, three-dimensional (3D)-ResNet with inception (I-ResNet), to identify participants with ASD and TD and propose a gradient-based backtracking method to pinpoint image areas that I-ResNet uses more heavily for classification. The proposed method was implemented in a preschool dataset with 110 participants and a public autism brain imaging data exchange (ABIDE) dataset with 1099 participants. An extra epilepsy dataset with 200 participants with clear degeneration in the parahippocampal area was applied as a verification and an extension. Among the datasets, we detected nine brain areas that differed significantly between ASD and TD. From the ROC in PASD and ABIDE, the sensitivity was 0.88 and 0.86, specificity was 0.75 and 0.62, and area under the curve was 0.787 and 0.856. In a word, I-ResNet with gradient-based backtracking could identify brain differences between ASD and TD. This study provides an alternative computer-aided technique for helping physicians to diagnose and screen children with an potential risk of ASD with deep learning model.

Authors

  • Shijun Li
    Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei Province, 430070 China. Electronic address: lishijun@mail.hzau.edu.cn.
  • Ziyang Tang
    Purdue University West Lafayette, Indiana.
  • Nanxin Jin
    Department of Computer and Information Technology, Purdue University, 401 N. Grant St, West Lafayette, IN, USA.
  • Qiansu Yang
    Department of Radiology, First Medical Center, Chinese PLA General Hospital, No. 28, Fuxing Road, Beijing, P. R. China.
  • Gang Liu
    Department of Interventional Radiology, Qinghai Red Cross Hospital, Xining, Qinghai, China.
  • Tiefang Liu
    Department of Radiology, First Medical Center, Chinese PLA General Hospital, No. 28, Fuxing Road, Beijing, P. R. China.
  • Jianxing Hu
    State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences , Peking University , Xueyuan Road 38 , Haidian District, 100191 Beijing , China.
  • Sijun Liu
    School of Pharmaceutical Sciences, Guangzhou, University of Chinese Medicine, No. 232, Waihuan East Road, Guangzhou, P. R. China.
  • Ping Wang
    School of Chemistry and Chemical Engineering, Shandong University of Technology, 255049, Zibo, PR China. Electronic address: wangping876@163.com.
  • Jingru Hao
    Department of Diagnostic Radiology, Affiliated Jinling Hospital, Medical School of Nanjing University, #305 East Zhongshan Rd, Nanjing, Jiangsu 210002, China.
  • Zhiqiang Zhang
    Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou 215163, China.
  • Xiaojing Zhang
    Department of Radiology, First Medical Center, Chinese PLA General Hospital, No. 28, Fuxing Road, Beijing, P. R. China.
  • Jinfeng Li
    Department of Radiology, First Medical Center, Chinese PLA General Hospital, No. 28, Fuxing Road, Beijing, P. R. China.
  • Xin Wang
    Key Laboratory of Bio-based Material Science & Technology (Northeast Forestry University), Ministry of Education, Harbin 150040, China.
  • Zhenzhen Li
    School of Materials and Chemical Engineering, Zhengzhou University of Light Industry, No. 136, Science Avenue, Zhengzhou, 450001, China.
  • Yi Wang
    Department of Neurology, Children's Hospital of Fudan University, National Children's Medical Center, Shanghai, China.
  • Baijian Yang
    Purdue University West Lafayette, Indiana.
  • Lin Ma
    Department of Radiation Oncology and Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, United States.