Contrast phase recognition in liver computer tomography using deep learning.

Journal: Scientific reports
Published Date:

Abstract

Hepatocellular carcinoma (HCC) has become the 4th leading cause of cancer-related deaths, with high social, economical and health implications. Imaging techniques such as multiphase computed tomography (CT) have been successfully used for diagnosis of liver tumors such as HCC in a feasible and accurate way and its interpretation relies mainly on comparing the appearance of the lesions in the different contrast phases of the exam. Recently, some researchers have been dedicated to the development of tools based on machine learning (ML) algorithms, especially by deep learning techniques, to improve the diagnosis of liver lesions in imaging exams. However, the lack of standardization in the naming of the CT contrast phases in the DICOM metadata is a problem for real-life deployment of machine learning tools. Therefore, it is important to correctly identify the exam phase based only on the image and not on the exam metadata, which is unreliable. Motivated by this problem, we successfully created an annotation platform and implemented a convolutional neural network (CNN) to automatically identify the CT scan phases in the HCFMUSP database in the city of São Paulo, Brazil. We improved this algorithm with hyperparameter tuning and evaluated it with cross validation methods. Comparing its predictions with the radiologists annotation, it achieved an accuracy of 94.6%, 98% and 100% in the testing dataset for the slice, volume and exam evaluation, respectively.

Authors

  • Bruno Aragão Rocha
    InRad, Institute of Radiology, University of São Paulo, School of Medicine, Rua Dr. Ovídio Pires de Campos, 75 Cerqueira César, São Paulo, SP, 05403-010, Brazil. bruno@machiron.com.br.
  • Lorena Carneiro Ferreira
    InRad, Institute of Radiology, University of São Paulo, School of Medicine, Rua Dr. Ovídio Pires de Campos, 75 Cerqueira César, São Paulo, SP, 05403-010, Brazil.
  • Luis Gustavo Rocha Vianna
    Machiron Ltd., Rua Capote Valente, 671, São Paulo, 05409-002, Brazil.
  • Luma Gallacio Gomes Ferreira
    Machiron Ltd., Rua Capote Valente, 671, São Paulo, 05409-002, Brazil.
  • Ana Claudia Martins Ciconelle
    Machiron Ltd., Rua Capote Valente, 671, São Paulo, 05409-002, Brazil.
  • Alex Da Silva Noronha
    Machiron Ltd., Rua Capote Valente, 671, São Paulo, 05409-002, Brazil.
  • João Martins Cortez Filho
    Department of Gastroenterology, University of São Paulo, School of Medicine (FMUSP), Hospital das Clínicas (HCFMUSP), Rua Dr. Enéas Carvalho de Aguiar, 225, São Paulo, SP, 05403-000, Brazil.
  • Lucas Salume Lima Nogueira
    Department of Gastroenterology, University of São Paulo, School of Medicine (FMUSP), Hospital das Clínicas (HCFMUSP), Rua Dr. Enéas Carvalho de Aguiar, 225, São Paulo, SP, 05403-000, Brazil.
  • Jean Michel Rocha Sampaio Leite
    Machiron Ltd., Rua Capote Valente, 671, São Paulo, 05409-002, Brazil.
  • Maurício Ricardo Moreira da Silva Filho
    InRad, Institute of Radiology, University of São Paulo, School of Medicine, Rua Dr. Ovídio Pires de Campos, 75 Cerqueira César, São Paulo, SP, 05403-010, Brazil.
  • Claudia da Costa Leite
    InRad, Institute of Radiology, University of São Paulo, School of Medicine, Rua Dr. Ovídio Pires de Campos, 75 Cerqueira César, São Paulo, SP, 05403-010, Brazil.
  • Marcelo de Maria Felix
    InRad, Institute of Radiology, University of São Paulo, School of Medicine, Rua Dr. Ovídio Pires de Campos, 75 Cerqueira César, São Paulo, SP, 05403-010, Brazil.
  • Marco Antonio Gutierrez
    Division of Informatics, Heart Institute (InCor), University of São Paulo Medical School, Av. Dr. Eneas de Carvalho, 44, cep:05403-900 São Paulo, Brazil.
  • Cesar Higa Nomura
    Instituto do Coracao (InCor), Hospital das Clinicas HCFMUSP, Faculdade de Medicina, Universidade de São Paulo, São Paulo, SP, Brazil.
  • Giovanni Guido Cerri
    Departamento de Radiologia, Faculdade de Medicina FMUSP, Universidade de Sao Paulo, Sao Paulo, SP, BR.
  • Flair José Carrilho
    Gastroenterology, Laboratório de Gastroenterologia Clínica e Experimental (LIM 07), University of Sao Paulo School of Medicine, Sao Paulo, Brazil.
  • Suzane Kioko Ono
    Divisao de Gastroenterologia e Hepatologia Clinica, Departamento de Gastroenterologia, Hospital das Clinicas HCFMUSP, Faculdade de Medicina, Universidade de Sao Paulo, Sao Paulo, SP, BR.