Dicentric chromosome assay using a deep learning-based automated system.

Journal: Scientific reports
PMID:

Abstract

The dicentric chromosome assay is the "gold standard" in biodosimetry for estimating radiation exposure. However, its large-scale deployment is limited owing to its time-consuming nature and requirement for expert reviewers. Therefore, a recently developed automated system was evaluated for the dicentric chromosome assay. A previously constructed deep learning-based automatic dose-estimation system (DLADES) was used to construct dose curves and calculate estimated doses. Blood samples from two donors were exposed to cobalt-60 gamma rays (0-4 Gy, 0.8 Gy/min). The DLADES efficiently identified monocentric and dicentric chromosomes but showed impaired recognition of complete cells with 46 chromosomes. We estimated the chromosome number of each "Accepted" sample in the DLADES and sorted similar-quality images by removing outliers using the 1.5IQR method. Eleven of the 12 data points followed Poisson distribution. Blind samples were prepared for each dose to verify the accuracy of the estimated dose generated by the curve. The estimated dose was calculated using Merkle's method. The actual dose for each sample was within the 95% confidence limits of the estimated dose. Sorting similar-quality images using chromosome numbers is crucial for the automated dicentric chromosome assay. We successfully constructed a dose-response curve and determined the estimated dose using the DLADES.

Authors

  • Soo Kyung Jeong
    Research Center, Dongnam Institute of Radiological & Medical Sciences (DIRAMS), 40 Jwadong-Gil, Jangan-Eup, Gijang-Gun, Busan, 46033, Republic of Korea.
  • Su Jung Oh
    Research Center, Dongnam Institute of Radiological & Medical Sciences (DIRAMS), 40 Jwadong-Gil, Jangan-Eup, Gijang-Gun, Busan, 46033, Republic of Korea.
  • Song-Hyun Kim
    Division of Advanced Nuclear Engineering, POSTECH, 77 Cheongam-Ro, Nam-Gu, Pohang 37673, Korea.
  • Seungsoo Jang
    Division of Advanced Nuclear Engineering, POSTECH, 77 Cheongam-Ro, Nam-Gu, Pohang 37673, Korea.
  • Yeong-Rok Kang
    Dongnam Institute of Radiological and Medical Science, 40 Jwadong-Gil, Jangan-Eup, Gijang-Gun, Busan, Korea.
  • Hyojin Kim
    Center for Applied Scientific Computing, Lawrence Livermore National Laboratory, Livermore, CA, United States.
  • Yong Uk Kye
    Research Center, Dongnam Institute of Radiological & Medical Sciences (DIRAMS), 40 Jwadong-Gil, Jangan-Eup, Gijang-Gun, Busan, 46033, Republic of Korea.
  • Seong Hun Lee
    Research Center, Dongnam Institute of Radiological & Medical Sciences (DIRAMS), 40 Jwadong-Gil, Jangan-Eup, Gijang-Gun, Busan, 46033, Republic of Korea.
  • Chang Geun Lee
    Research Center, Dongnam Institute of Radiological & Medical Sciences (DIRAMS), 40 Jwadong-Gil, Jangan-Eup, Gijang-Gun, Busan, 46033, Republic of Korea.
  • Moon-Taek Park
    Research Center, Dongnam Institute of Radiological & Medical Sciences (DIRAMS), 40 Jwadong-Gil, Jangan-Eup, Gijang-Gun, Busan, 46033, Republic of Korea.
  • Joong Sun Kim
    College of Veterinary Medicine and BK21 Plus Project Team, Chonnam National University, 77 Yongbong-Ro, Buk-Gu, Gwangju, 61186, Republic of Korea.
  • Min Ho Jeong
    Department of Microbiology, Dong-A University College of Medicine, Daeshingongwon-Gil 32, Seo-Gu, Busan, 602-714, Republic of Korea. mhjeong@dau.ac.kr.
  • Wol Soon Jo
    Research Center, Dongnam Institute of Radiological & Medical Sciences (DIRAMS), 40 Jwadong-Gil, Jangan-Eup, Gijang-Gun, Busan, 46033, Republic of Korea. sailorjo@dirams.re.kr.