Validation of deep learning techniques for quality augmentation in diffusion MRI for clinical studies.

Journal: NeuroImage. Clinical
PMID:

Abstract

The objective of this study is to evaluate the efficacy of deep learning (DL) techniques in improving the quality of diffusion MRI (dMRI) data in clinical applications. The study aims to determine whether the use of artificial intelligence (AI) methods in medical images may result in the loss of critical clinical information and/or the appearance of false information. To assess this, the focus was on the angular resolution of dMRI and a clinical trial was conducted on migraine, specifically between episodic and chronic migraine patients. The number of gradient directions had an impact on white matter analysis results, with statistically significant differences between groups being drastically reduced when using 21 gradient directions instead of the original 61. Fourteen teams from different institutions were tasked to use DL to enhance three diffusion metrics (FA, AD and MD) calculated from data acquired with 21 gradient directions and a b-value of 1000 s/mm. The goal was to produce results that were comparable to those calculated from 61 gradient directions. The results were evaluated using both standard image quality metrics and Tract-Based Spatial Statistics (TBSS) to compare episodic and chronic migraine patients. The study results suggest that while most DL techniques improved the ability to detect statistical differences between groups, they also led to an increase in false positive. The results showed that there was a constant growth rate of false positives linearly proportional to the new true positives, which highlights the risk of generalization of AI-based tasks when assessing diverse clinical cohorts and training using data from a single group. The methods also showed divergent performance when replicating the original distribution of the data and some exhibited significant bias. In conclusion, extreme caution should be exercised when using AI methods for harmonization or synthesis in clinical studies when processing heterogeneous data in clinical studies, as important information may be altered, even when global metrics such as structural similarity or peak signal-to-noise ratio appear to suggest otherwise.

Authors

  • Santiago Aja-Fernández
    LPI, ETSI Telecomunicación, Universidad de Valladolid, Valladolid, Spain.
  • Carmen Martín-Martín
    Laboratorio de Procesado de Imagen (LPI), ETSI Telecomunicación, Universidad de Valladolid, Spain.
  • Álvaro Planchuelo-Gómez
    Laboratorio de Procesado de Imagen (LPI), ETSI Telecomunicación, Universidad de Valladolid, Spain; Cardiff University Brain Research Imaging Centre (CUBRIC), School of Psychology, Cardiff University, Cardiff, UK.
  • Abrar Faiyaz
    University of Rochester, USA.
  • Md Nasir Uddin
    Communication Research Laboratory, Department of Information and Communication Technology, Islamic University, Kushtia 7003, Bangladesh.
  • Giovanni Schifitto
    Department of Neurology, University of Rochester Medical Center, 601 Elmwood Ave, Rochester, NY, 14642, USA.
  • Abhishek Tiwari
    Shiv Nadar Institution of Eminence, India.
  • Saurabh J Shigwan
    Shiv Nadar Institution of Eminence, India.
  • Rajeev Kumar Singh
    Shiv Nadar Institution of Eminence, India.
  • Tianshu Zheng
    Zhejiang University, China.
  • Zuozhen Cao
    Zhejiang University, China.
  • Dan Wu
    Xi'an Aerospace Propulsion Institute, Xi'an 710049, China.
  • Stefano B Blumberg
    University College London, London, United Kingdom.
  • Snigdha Sen
    University College London, UK.
  • Tobias Goodwin-Allcock
    University College London, UK.
  • Paddy J Slator
    University College London, UK.
  • Mehmet Yigit Avci
    Athinoula A. Martinos Center for Biomedical Imaging, USA.
  • Zihan Li
    MicroPort(Shanghai) MedBot Co. Ltd, Shanghai, 200031.
  • Berkin Bilgic
    Department of Radiology, Harvard Medical School, Boston, MA, USA.
  • Qiyuan Tian
    Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts.
  • Xinyi Wang
    School of Biological Sciences & Medical Engineering, Southeast University, Nanjing, China.
  • Zihao Tang
    University of Sydney, Australia.
  • Mariano Cabezas
    Research institute of Computer Vision and Robotics, University of Girona, Spain.
  • Amelie Rauland
    RWTH Aachen University, Germany.
  • Dorit Merhof
    Department of Diagnostic and Interventional Radiology, University Hospital Düsseldorf, Düsseldorf, Germany (J.S., D.B.A., S.N.); Institute of Computer Vision and Imaging, RWTH University Aachen, Pauwelsstrasse 30, 52072 Aachen, Germany (J.S., D.M.); Department of Diagnostic and Interventional Radiology, University Hospital Aachen, Aachen, Germany (D.T., M.P., F.M., C.K., S.N.); and Faculty of Mathematics and Natural Sciences, Institute of Informatics, Heinrich Heine University Düsseldorf, Düsseldorf, Germany (S.C.).
  • Renata Manzano Maria
    University of Sao Paulo, Brazil.
  • Vinícius Paraníba Campos
    University of Sao Paulo, Brazil.
  • Tales Santini
    Western University, Canada.
  • Marcelo Andrade da Costa Vieira
    University of Sao Paulo, Brazil.
  • SeyyedKazem HashemizadehKolowri
    Department of Radiology and Imaging Sciences, University of Utah, Salt Lake City, UT, USA.
  • Edward DiBella
    Utah Center for Advanced Imaging Research (UCAIR), Department of Radiology and Imaging Sciences, University of Utah Salt Lake City, UT, USA; Department of Biomedical Engineering, University of Utah, Salt Lake City, UT, USA.
  • Chenxu Peng
    Zhejiang University of Technology, China.
  • Zhimin Shen
    Zhejiang University of Technology, China.
  • Zan Chen
    Zhejiang University of Technology, China.
  • Irfan Ullah
    Reading Academy, Nanjing University of Information Science and Technology, Nanjing, China.
  • Merry Mani
    Department of Radiology, University of Iowa, Iowa City, Iowa, USA.
  • Hesam Abdolmotalleby
    University of Iowa, USA.
  • Samuel Eckstrom
    New York University, USA.
  • Steven H Baete
    New York University, USA.
  • Patryk Filipiak
    New York University, USA.
  • Tanxin Dong
    Tianjin University, China.
  • Qiuyun Fan
    Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, United States; Harvard Medical School, Boston, MA, United States.
  • Rodrigo de Luis-García
    Laboratorio de Procesado de Imagen, University of Valladolid, Valladolid, Spain.
  • Antonio Tristán-Vega
    Laboratorio de Procesado de Imagen (LPI), ETSI Telecomunicación, Universidad de Valladolid, Spain.
  • Tomasz Pieciak
    AGH University of Science and Technology, Kraków, Poland; LPI, ETSI Telecomunicación, Universidad de Valladolid, Valladolid, Spain.