A deep learning-based cancer survival time classifier for small datasets.

Journal: Computers in biology and medicine
PMID:

Abstract

Cancer survival time prediction using Deep Learning (DL) has been an emerging area of research. However, non-availability of large-sized annotated medical imaging databases affects the training performance of DL models leading to their arguable usage in many clinical applications. In this research work, a neural network model is customized for small sample space to avoid data over-fitting for DL training. A set of prognostic radiomic features is selected through an iterative process using average of multiple dropouts which results in back-propagated gradients with low variance, thus increasing the network learning capability, reliable feature selection and better training over a small database. The proposed classifier is further compared with erasing feature selection method proposed in the literature for improved network training and with other well-known classifiers on small sample size. Achieved results which were statistically validated show efficient and improved classification of cancer survival time into three intervals of 6 months, between 6 months up to 2 years, and above 2 years; and has the potential to aid health care professionals in lung tumor evaluation for timely treatment and patient care.

Authors

  • Hina Shakir
    Department of Software Engineering, Bahria University, 13-National Stadium Road Karachi, 75620, Pakistan. Electronic address: hinashakir.bukc@bahria.edu.pk.
  • Bushra Aijaz
    Department of Electrical Engineering, Bahria University, 13-National Stadium Road Karachi, 75620, Pakistan. Electronic address: bushra.aijaz.37@gmail.com.
  • Tariq Mairaj Rasool Khan
    Department of Electrical and Power Engineering, Pakistan Navy Engineering College, National University of Science and Technology, Karachi, Pakistan. Electronic address: khan.tariq@pnec.edu.pk.
  • Muhammad Hussain
    Visual Computing Lab, Department of Computer Science, College of Computer and Information Sciences, King Saud University Riyadh, Saudi Arabia.