Label-free liquid biopsy through the identification of tumor cells by machine learning-powered tomographic phase imaging flow cytometry.

Journal: Scientific reports
PMID:

Abstract

Image-based identification of circulating tumor cells in microfluidic cytometry condition is one of the most challenging perspectives in the Liquid Biopsy scenario. Here we show a machine learning-powered tomographic phase imaging flow cytometry system capable to provide high-throughput 3D phase-contrast tomograms of each single cell. In fact, we show that discrimination of tumor cells against white blood cells is potentially achievable with the aid of artificial intelligence in a label-free flow-cyto-tomography method. We propose a hierarchical machine learning decision-maker, working on a set of features calculated from the 3D tomograms of the cells' refractive index. We prove that 3D morphological features are adequately distinctive to identify tumor cells versus the white blood cell background in the first stage and, moreover, in recognizing the tumor type at the second decision step. Proof-of-concept experiments are shown, in which two different tumor cell lines, namely neuroblastoma cancer cells and ovarian cancer cells, are used against monocytes. The reported results allow claiming the identification of tumor cells with a success rate higher than 97% and with an accuracy over 97% in discriminating between the two cancer cell types, thus opening in a near future the route to a new Liquid Biopsy tool for detecting and classifying circulating tumor cells in blood by stain-free method.

Authors

  • Daniele Pirone
    CNR-ISASI, Institute of Applied Sciences and Intelligent Systems "E. Caianiello", Via Campi Flegrei 34, 80078 Pozzuoli, Napoli, Italy. pietro.ferraro@isasi.cnr.it.
  • Annalaura Montella
    CEINGE Advanced Biotechnologies, Naples, Italy.
  • Daniele G Sirico
    CNR-ISASI, Institute of Applied Sciences and Intelligent Systems "Eduardo Caianiello", Via Campi Flegrei 34, 80078, Pozzuoli, Naples, Italy.
  • Martina Mugnano
    CNR-ISASI, Institute of Applied Sciences and Intelligent Systems "E. Caianiello", Via Campi Flegrei 34, 80078 Pozzuoli, Napoli, Italy. pietro.ferraro@isasi.cnr.it.
  • Massimiliano M Villone
    Department of Chemical, Materials and Production Engineering, DICMaPI, University of Naples "Federico II", Piazzale Tecchio 80, 80125, Naples, Italy.
  • Vittorio Bianco
    Institute of Applied Sciences and Intelligent Systems (ISASI) National Research Council (CNR) of Italy, Via Campi Flegrei 34, 80078 Pozzuoli, NA, Italy.
  • Lisa Miccio
    CNR-ISASI, Institute of Applied Sciences and Intelligent Systems "E. Caianiello", Via Campi Flegrei 34, 80078 Pozzuoli, Napoli, Italy. pietro.ferraro@isasi.cnr.it.
  • Anna Maria Porcelli
    Department of Pharmacy and Biotechnology (FABIT), University of Bologna, Bologna, Italy.
  • Ivana Kurelac
    Centre for Applied Biomedical Research (CRBA), University of Bologna, Bologna, Italy.
  • Mario Capasso
    CEINGE Advanced Biotechnologies, Naples, Italy.
  • Achille Iolascon
    CEINGE Advanced Biotechnologies, Naples, Italy.
  • Pier Luca Maffettone
    Department of Chemical, Materials and Production Engineering, DICMaPI, University of Naples "Federico II", Piazzale Tecchio 80, 80125, Naples, Italy.
  • Pasquale Memmolo
    Institute of Applied Sciences and Intelligent Systems (ISASI) National Research Council (CNR) of Italy, Via Campi Flegrei 34, 80078 Pozzuoli, NA, Italy.
  • Pietro Ferraro
    Institute of Applied Sciences and Intelligent Systems (ISASI) National Research Council (CNR) of Italy, Via Campi Flegrei 34, 80078 Pozzuoli, NA, Italy.