Boosting multiple sclerosis lesion segmentation through attention mechanism.

Journal: Computers in biology and medicine
Published Date:

Abstract

Magnetic resonance imaging is a fundamental tool to reach a diagnosis of multiple sclerosis and monitoring its progression. Although several attempts have been made to segment multiple sclerosis lesions using artificial intelligence, fully automated analysis is not yet available. State-of-the-art methods rely on slight variations in segmentation architectures (e.g. U-Net, etc.). However, recent research has demonstrated how exploiting temporal-aware features and attention mechanisms can provide a significant boost to traditional architectures. This paper proposes a framework that exploits an augmented U-Net architecture with a convolutional long short-term memory layer and attention mechanism which is able to segment and quantify multiple sclerosis lesions detected in magnetic resonance images. Quantitative and qualitative evaluation on challenging examples demonstrated how the method outperforms previous state-of-the-art approaches, reporting an overall Dice score of 89% and also demonstrating robustness and generalization ability on never seen new test samples of a new dedicated under construction dataset.

Authors

  • Alessia Rondinella
    Department of Mathematics and Computer Science, University of Catania, Viale Andrea Doria 6, Catania, 95125, Italy. Electronic address: alessia.rondinella@unicampus.it.
  • Elena Crispino
    Department of Biomedical and Biotechnological Sciences, University of Catania, Via Santa Sofia 97, Catania, 95125, Italy.
  • Francesco Guarnera
    Department of Mathematics and Computer Science, University of Catania, Viale Andrea Doria 6, Catania, 95125, Italy.
  • Oliver Giudice
    Department of Mathematics and Computer Science, University of Catania, Viale Andrea Doria 6, Catania, 95125, Italy.
  • Alessandro Ortis
    Department of Mathematics and Computer Science, University of Catania, Viale Andrea Doria 6, Catania, 95125, Italy.
  • Giulia Russo
    Department of Drug Sciences, University of Catania , Catania, Italy.
  • Clara Di Lorenzo
    UOC Radiologia, ARNAS Garibaldi, P.zza S. Maria di Gesù, Catania, 95124, Italy.
  • Davide Maimone
    Garibaldi Hospital, Catania, Italy.
  • Francesco Pappalardo
    Department of Drug Sciences, University of Catania , Catania, Italy.
  • Sebastiano Battiato
    Department of Mathematics and Computer Science, University of Catania, Catania, Italy.