Enhancing Total Optical Throughput of Microscopy with Deep Learning for Intravital Observation.

Journal: Small methods
PMID:

Abstract

The significance of performing large-depth dynamic microscopic imaging in vivo for life science research cannot be overstated. However, the optical throughput of the microscope limits the available information per unit of time, i.e., it is difficult to obtain both high spatial and temporal resolution at once. Here, a method is proposed to construct a kind of intravital microscopy with high optical throughput, by making near-infrared-II (NIR-II, 900-1880 nm) wide-field fluorescence microscopy learn from two-photon fluorescence microscopy based on a scale-recurrent network. Using this upgraded NIR-II fluorescence microscope, vessels in the opaque brain of a rodent are reconstructed three-dimensionally. Five-fold axial and thirteen-fold lateral resolution improvements are achieved without sacrificing temporal resolution and light utilization. Also, tiny cerebral vessel dilatations in early acute respiratory failure mice are observed, with this high optical throughput NIR-II microscope at an imaging speed of 30 fps.

Authors

  • Runze Chen
    Department of Computer Science, University of Manchester, Manchester, United Kingdom.
  • Shiyi Peng
    College of Optical Science and Engineering, State Key Laboratory of Modern Optical Instrumentations, International Research Center for Advanced Photonics, Centre for Optical and Electromagnetic Research, Zhejiang University, 310058, Hangzhou, China.
  • Liang Zhu
    SINOPEC Research Institute of Safety Engineering Co., Ltd., Qingdao 266104, China.
  • Jia Meng
    Department of Biological Sciences, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu Province, China.
  • Xiaoxiao Fan
    School of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing 102488, China.
  • Zhe Feng
    Department of Cardiovascular Surgery, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi, China.
  • Hequn Zhang
    College of Optical Science and Engineering, State Key Laboratory of Modern Optical Instrumentations, International Research Center for Advanced Photonics, Centre for Optical and Electromagnetic Research, Zhejiang University, 310058, Hangzhou, China.
  • Jun Qian
    State Key Laboratory of Radiation Medicine and Protection, School for Radiological and Interdisciplinary Sciences, Soochow University, 215123 Suzhou, China.